data_L2Y
# 
_chem_comp.id                                    L2Y 
_chem_comp.name                                  "(S)-N-[(1E)-1-(diethylamino)ethylidene]-P-methylphosphonamidic fluoride" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H16 F N2 O P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "A-230 (Nerve agent)" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-02-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        194.187 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L2Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6NTO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L2Y C01 C1  C 0 1 N N N N N N 4.006 -50.164 -30.864 3.380  -1.207 0.858  C01 L2Y 1  
L2Y C02 C2  C 0 1 N N N N N N 3.920 -51.480 -30.093 2.899  -0.879 -0.558 C02 L2Y 2  
L2Y C04 C3  C 0 1 N N N N N N 1.677 -52.123 -30.618 2.109  1.531  -0.636 C04 L2Y 3  
L2Y C05 C4  C 0 1 N N N N N N 1.243 -52.493 -29.202 2.399  2.135  0.739  C05 L2Y 4  
L2Y C06 C5  C 0 1 N N N N N N 3.379 -53.804 -30.460 0.525  -0.313 -0.289 C06 L2Y 5  
L2Y C07 C6  C 0 1 N N N N N N 4.883 -53.918 -30.214 0.210  -1.785 -0.220 C07 L2Y 6  
L2Y C11 C7  C 0 1 N N N N N N 4.628 -56.986 -32.065 -3.101 1.438  -0.406 C11 L2Y 7  
L2Y N03 N1  N 0 1 N N N N N N 3.083 -52.425 -30.816 1.815  0.103  -0.490 N03 L2Y 8  
L2Y N08 N2  N 0 1 N N N N N N 3.022 -54.610 -31.615 -0.423 0.558  -0.160 N08 L2Y 9  
L2Y O12 O1  O 0 1 N N N N N N 2.905 -56.676 -29.773 -2.230 -1.070 -0.922 O12 L2Y 10 
L2Y P09 P1  P 0 1 N N S N N N 3.056 -56.293 -31.357 -1.977 0.060  -0.001 P09 L2Y 11 
L2Y F1  F1  F 0 1 N Y N N N N 1.937 -56.609 -32.135 -2.246 -0.433 1.572  F1  L2Y 12 
L2Y H1  H1  H 0 1 N N N N N N 4.640 -49.455 -30.311 3.743  -0.298 1.337  H1  L2Y 13 
L2Y H2  H2  H 0 1 N N N N N N 4.442 -50.349 -31.857 2.553  -1.617 1.436  H2  L2Y 14 
L2Y H3  H3  H 0 1 N N N N N N 2.997 -49.740 -30.980 4.187  -1.938 0.807  H3  L2Y 15 
L2Y H4  H4  H 0 1 N N N N N N 4.929 -51.901 -29.977 3.726  -0.468 -1.137 H4  L2Y 16 
L2Y H5  H5  H 0 1 N N N N N N 3.485 -51.293 -29.100 2.536  -1.789 -1.037 H5  L2Y 17 
L2Y H6  H6  H 0 1 N N N N N N 1.512 -51.047 -30.777 1.252  2.035  -1.082 H6  L2Y 18 
L2Y H7  H7  H 0 1 N N N N N N 1.079 -52.697 -31.341 2.980  1.658  -1.280 H7  L2Y 19 
L2Y H8  H8  H 0 1 N N N N N N 0.177 -52.257 -29.071 3.257  1.631  1.184  H8  L2Y 20 
L2Y H9  H9  H 0 1 N N N N N N 1.403 -53.569 -29.039 2.618  3.198  0.630  H9  L2Y 21 
L2Y H10 H10 H 0 1 N N N N N N 1.837 -51.920 -28.475 1.528  2.009  1.382  H10 L2Y 22 
L2Y H12 H12 H 0 1 N N N N N N 5.159 -53.310 -29.340 1.092  -2.329 0.119  H12 L2Y 23 
L2Y H13 H13 H 0 1 N N N N N N 5.145 -54.970 -30.026 -0.609 -1.949 0.481  H13 L2Y 24 
L2Y H14 H14 H 0 1 N N N N N N 5.428 -53.557 -31.099 -0.080 -2.142 -1.208 H14 L2Y 25 
L2Y H15 H15 H 0 1 N N N N N N 4.656 -58.073 -31.902 -2.926 1.760  -1.432 H15 L2Y 26 
L2Y H16 H16 H 0 1 N N N N N N 4.668 -56.776 -33.144 -4.134 1.107  -0.300 H16 L2Y 27 
L2Y H17 H17 H 0 1 N N N N N N 5.491 -56.518 -31.569 -2.914 2.270  0.273  H17 L2Y 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L2Y C11 P09 SING N N 1  
L2Y N08 P09 SING N N 2  
L2Y N08 C06 DOUB N N 3  
L2Y P09 O12 DOUB N N 4  
L2Y C01 C02 SING N N 5  
L2Y N03 C04 SING N N 6  
L2Y N03 C06 SING N N 7  
L2Y N03 C02 SING N N 8  
L2Y C04 C05 SING N N 9  
L2Y C06 C07 SING N N 10 
L2Y P09 F1  SING N N 11 
L2Y C01 H1  SING N N 12 
L2Y C01 H2  SING N N 13 
L2Y C01 H3  SING N N 14 
L2Y C02 H4  SING N N 15 
L2Y C02 H5  SING N N 16 
L2Y C04 H6  SING N N 17 
L2Y C04 H7  SING N N 18 
L2Y C05 H8  SING N N 19 
L2Y C05 H9  SING N N 20 
L2Y C05 H10 SING N N 21 
L2Y C07 H12 SING N N 22 
L2Y C07 H13 SING N N 23 
L2Y C07 H14 SING N N 24 
L2Y C11 H15 SING N N 25 
L2Y C11 H16 SING N N 26 
L2Y C11 H17 SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L2Y SMILES           ACDLabs              12.01 "CCN(CC)C(\C)=N\P(C)(=O)F"                                                      
L2Y InChI            InChI                1.03  "InChI=1S/C7H16FN2OP/c1-5-10(6-2)7(3)9-12(4,8)11/h5-6H2,1-4H3/b9-7+/t12-/m0/s1" 
L2Y InChIKey         InChI                1.03  OUJDIWHRYQBZSR-CRALRDPISA-N                                                     
L2Y SMILES_CANONICAL CACTVS               3.385 "CCN(CC)C(C)=N[P@](C)(F)=O"                                                     
L2Y SMILES           CACTVS               3.385 "CCN(CC)C(C)=N[P](C)(F)=O"                                                      
L2Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN(CC)/C(=N/[P@](=O)(C)F)/C"                                                  
L2Y SMILES           "OpenEye OEToolkits" 2.0.7 "CCN(CC)C(=NP(=O)(C)F)C"                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
L2Y "SYSTEMATIC NAME" ACDLabs              12.01 "(S)-N-[(1E)-1-(diethylamino)ethylidene]-P-methylphosphonamidic fluoride" 
L2Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N},~{N}-diethyl-~{N}'-[fluoranyl(methyl)phosphoryl]ethanimidamide"     
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      L2Y 
_pdbx_chem_comp_synonyms.name         "A-230 (Nerve agent)" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L2Y "Create component" 2019-02-01 RCSB 
L2Y "Modify synonyms"  2019-05-02 RCSB 
L2Y "Modify synonyms"  2020-06-05 PDBE 
L2Y "Initial release"  2020-07-01 RCSB 
L2Y "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            L2Y 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P09 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
