data_U6Y
# 
_chem_comp.id                                    U6Y 
_chem_comp.name                                  "benzyl {(3S)-1-[(2S)-1-({(2S,3R)-4-(cyclopropylamino)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-5-oxopyrrolidin-3-yl}carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H41 N5 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        571.665 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U6Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DZB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U6Y C1  C1  C 0 1 N N N N N N -20.724 -1.636 18.629 0.667   3.572  -3.169 C1  U6Y 1  
U6Y C2  C2  C 0 1 N N N N N N -19.674 -0.782 17.839 0.591   3.771  -1.654 C2  U6Y 2  
U6Y C3  C3  C 0 1 N N N N N N -20.097 -0.746 16.344 1.466   2.726  -0.959 C3  U6Y 3  
U6Y C4  C4  C 0 1 N N S N N N -19.176 0.107  15.508 0.872   1.334  -1.179 C4  U6Y 4  
U6Y N1  N1  N 0 1 N N N N N N -19.518 1.506  15.560 -0.436  1.252  -0.523 N1  U6Y 5  
U6Y C5  C5  C 0 1 N N N N N N -18.739 2.465  14.755 -0.640  1.454  0.790  C5  U6Y 6  
U6Y C6  C6  C 0 1 N N N N N N -19.340 3.889  15.006 -2.109  1.300  1.118  C6  U6Y 7  
U6Y C7  C7  C 0 1 N N S N N N -20.667 3.537  15.685 -2.815  1.387  -0.255 C7  U6Y 8  
U6Y N2  N2  N 0 1 N N N N N N -20.961 4.417  16.824 -3.955  0.468  -0.317 N2  U6Y 9  
U6Y C8  C8  C 0 1 N N N N N N -21.961 5.463  16.732 -5.162  0.862  0.134  C8  U6Y 10 
U6Y O1  O1  O 0 1 N N N N N N -22.003 6.291  17.870 -6.210  0.018  0.077  O1  U6Y 11 
U6Y C9  C9  C 0 1 N N N N N N -22.960 7.367  17.841 -7.480  0.509  0.580  C9  U6Y 12 
U6Y C10 C10 C 0 1 Y N N N N N -22.539 8.602  16.989 -8.527  -0.566 0.436  C10 U6Y 13 
U6Y C11 C11 C 0 1 Y N N N N N -23.326 9.797  17.073 -8.734  -1.470 1.461  C11 U6Y 14 
U6Y C12 C12 C 0 1 Y N N N N N -23.019 10.959 16.328 -9.694  -2.456 1.328  C12 U6Y 15 
U6Y C13 C13 C 0 1 Y N N N N N -21.918 10.954 15.481 -10.447 -2.537 0.171  C13 U6Y 16 
U6Y C14 C14 C 0 1 Y N N N N N -21.147 9.785  15.382 -10.239 -1.633 -0.853 C14 U6Y 17 
U6Y C15 C15 C 0 1 Y N N N N N -21.426 8.625  16.137 -9.284  -0.643 -0.718 C15 U6Y 18 
U6Y O2  O2  O 0 1 N N N N N N -22.725 5.577  15.785 -5.306  1.978  0.592  O2  U6Y 19 
U6Y C16 C16 C 0 1 N N N N N N -20.587 2.149  16.304 -1.692  0.945  -1.217 C16 U6Y 20 
U6Y O3  O3  O 0 1 N N N N N N -17.847 2.104  14.031 0.228   1.720  1.595  O3  U6Y 21 
U6Y C17 C17 C 0 1 N N N N N N -19.300 -0.343 14.081 1.793   0.295  -0.593 C17 U6Y 22 
U6Y N3  N3  N 0 1 N N N N N N -18.138 -0.967 13.526 3.058   0.184  -1.046 N3  U6Y 23 
U6Y C18 C18 C 0 1 N N S N N N -18.196 -1.541 12.195 3.919   -0.895 -0.557 C18 U6Y 24 
U6Y C19 C19 C 0 1 N N R N N N -17.896 -3.024 12.446 5.382   -0.454 -0.632 C19 U6Y 25 
U6Y O4  O4  O 0 1 N N N N N N -18.791 -3.418 13.468 5.720   -0.153 -1.987 O4  U6Y 26 
U6Y C20 C20 C 0 1 N N N N N N -18.361 -3.903 11.260 5.581   0.772  0.221  C20 U6Y 27 
U6Y N4  N4  N 0 1 N N N N N N -19.558 -4.753 11.466 5.421   0.698  1.557  N4  U6Y 28 
U6Y C21 C21 C 0 1 N N N N N N -19.994 -5.699 10.417 5.615   1.890  2.385  C21 U6Y 29 
U6Y C22 C22 C 0 1 N N N N N N -21.362 -6.333 10.598 4.890   1.940  3.732  C22 U6Y 30 
U6Y C23 C23 C 0 1 N N N N N N -21.170 -5.242 9.536  6.404   1.726  3.685  C23 U6Y 31 
U6Y O5  O5  O 0 1 N N N N N N -17.782 -3.906 10.209 5.886   1.826  -0.296 O5  U6Y 32 
U6Y C24 C24 C 0 1 N N N N N N -17.155 -0.954 11.284 3.716   -2.141 -1.422 C24 U6Y 33 
U6Y C25 C25 C 0 1 N N S N N N -17.462 0.549  11.049 4.521   -3.303 -0.839 C25 U6Y 34 
U6Y C26 C26 C 0 1 N N N N N N -18.732 0.789  10.287 4.447   -4.535 -1.771 C26 U6Y 35 
U6Y C27 C27 C 0 1 N N N N N N -18.432 1.809  9.193  4.404   -5.697 -0.755 C27 U6Y 36 
U6Y N5  N5  N 0 1 N N N N N N -16.900 1.868  9.128  3.842   -5.123 0.474  N5  U6Y 37 
U6Y C28 C28 C 0 1 N N N N N N -16.329 1.081  10.250 3.902   -3.778 0.458  C28 U6Y 38 
U6Y O6  O6  O 0 1 N N N N N N -15.178 0.965  10.523 3.514   -3.055 1.351  O6  U6Y 39 
U6Y O7  O7  O 0 1 N N N N N N -20.277 -0.172 13.411 1.397   -0.441 0.286  O7  U6Y 40 
U6Y C29 C29 C 0 1 N N N N N N -18.252 -1.410 17.937 1.089   5.173  -1.297 C29 U6Y 41 
U6Y H1  H1  H 0 1 N N N N N N -20.442 -1.674 19.692 1.699   3.686  -3.499 H1  U6Y 42 
U6Y H2  H2  H 0 1 N N N N N N -21.719 -1.177 18.530 0.312   2.574  -3.423 H2  U6Y 43 
U6Y H3  H3  H 0 1 N N N N N N -20.749 -2.657 18.220 0.043   4.317  -3.665 H3  U6Y 44 
U6Y H4  H4  H 0 1 N N N N N N -19.654 0.241  18.243 -0.442  3.657  -1.324 H4  U6Y 45 
U6Y H5  H5  H 0 1 N N N N N N -21.116 -0.338 16.275 2.473   2.761  -1.374 H5  U6Y 46 
U6Y H6  H6  H 0 1 N N N N N N -20.085 -1.772 15.948 1.507   2.939  0.110  H6  U6Y 47 
U6Y H7  H7  H 0 1 N N N N N N -18.140 -0.042 15.846 0.754   1.154  -2.248 H7  U6Y 48 
U6Y H8  H8  H 0 1 N N N N N N -18.696 4.488  15.667 -2.296  0.332  1.583  H8  U6Y 49 
U6Y H9  H9  H 0 1 N N N N N N -19.501 4.430  14.062 -2.441  2.108  1.770  H9  U6Y 50 
U6Y H10 H10 H 0 1 N N N N N N -21.483 3.572  14.948 -3.127  2.409  -0.469 H10 U6Y 51 
U6Y H11 H11 H 0 1 N N N N N N -20.461 4.292  17.681 -3.840  -0.423 -0.682 H11 U6Y 52 
U6Y H12 H12 H 0 1 N N N N N N -23.124 7.706  18.875 -7.376  0.776  1.632  H12 U6Y 53 
U6Y H13 H13 H 0 1 N N N N N N -23.902 6.975  17.430 -7.781  1.388  0.011  H13 U6Y 54 
U6Y H14 H14 H 0 1 N N N N N N -24.184 9.810  17.729 -8.146  -1.407 2.364  H14 U6Y 55 
U6Y H15 H15 H 0 1 N N N N N N -23.635 11.842 16.417 -9.856  -3.163 2.128  H15 U6Y 56 
U6Y H16 H16 H 0 1 N N N N N N -21.660 11.833 14.909 -11.196 -3.308 0.068  H16 U6Y 57 
U6Y H17 H17 H 0 1 N N N N N N -20.308 9.773  14.702 -10.827 -1.696 -1.757 H17 U6Y 58 
U6Y H18 H18 H 0 1 N N N N N N -20.785 7.759  16.058 -9.122  0.064  -1.518 H18 U6Y 59 
U6Y H19 H19 H 0 1 N N N N N N -21.536 1.607  16.177 -1.754  1.503  -2.151 H19 U6Y 60 
U6Y H20 H20 H 0 1 N N N N N N -20.340 2.210  17.374 -1.765  -0.125 -1.411 H20 U6Y 61 
U6Y H21 H21 H 0 1 N N N N N N -17.289 -1.007 14.054 3.398   0.820  -1.695 H21 U6Y 62 
U6Y H22 H22 H 0 1 N N N N N N -19.198 -1.429 11.756 3.661   -1.125 0.477  H22 U6Y 63 
U6Y H23 H23 H 0 1 N N N N N N -16.837 -3.194 12.690 6.023   -1.258 -0.268 H23 U6Y 64 
U6Y H24 H24 H 0 1 N N N N N N -18.598 -2.934 14.263 5.188   0.555  -2.377 H24 U6Y 65 
U6Y H25 H25 H 0 1 N N N N N N -20.074 -4.686 12.320 5.177   -0.145 1.970  H25 U6Y 66 
U6Y H26 H26 H 0 1 N N N N N N -19.222 -6.311 9.928  5.730   2.828  1.841  H26 U6Y 67 
U6Y H27 H27 H 0 1 N N N N N N -21.950 -6.120 11.503 4.529   2.911  4.073  H27 U6Y 68 
U6Y H28 H28 H 0 1 N N N N N N -21.529 -7.376 10.289 4.269   1.086  4.001  H28 U6Y 69 
U6Y H29 H29 H 0 1 N N N N N N -21.614 -4.246 9.681  6.780   0.731  3.924  H29 U6Y 70 
U6Y H30 H30 H 0 1 N N N N N N -21.193 -5.502 8.467  7.040   2.556  3.997  H30 U6Y 71 
U6Y H31 H31 H 0 1 N N N N N N -17.168 -1.486 10.321 2.659   -2.403 -1.439 H31 U6Y 72 
U6Y H32 H32 H 0 1 N N N N N N -16.162 -1.058 11.747 4.056   -1.937 -2.437 H32 U6Y 73 
U6Y H33 H33 H 0 1 N N N N N N -17.509 1.062  12.021 5.558   -3.007 -0.680 H33 U6Y 74 
U6Y H34 H34 H 0 1 N N N N N N -19.506 1.182  10.963 3.541   -4.512 -2.376 H34 U6Y 75 
U6Y H35 H35 H 0 1 N N N N N N -19.082 -0.152 9.836  5.334   -4.600 -2.402 H35 U6Y 76 
U6Y H36 H36 H 0 1 N N N N N N -18.848 2.793  9.455  3.764   -6.498 -1.124 H36 U6Y 77 
U6Y H37 H37 H 0 1 N N N N N N -18.849 1.479  8.230  5.410   -6.075 -0.570 H37 U6Y 78 
U6Y H38 H38 H 0 1 N N N N N N -16.369 2.360  8.438  3.476   -5.646 1.204  H38 U6Y 79 
U6Y H39 H39 H 0 1 N N N N N N -17.937 -1.443 18.990 2.147   5.257  -1.548 H39 U6Y 80 
U6Y H40 H40 H 0 1 N N N N N N -18.273 -2.431 17.529 0.522   5.914  -1.860 H40 U6Y 81 
U6Y H41 H41 H 0 1 N N N N N N -17.541 -0.799 17.361 0.954   5.345  -0.230 H41 U6Y 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U6Y N5  C27 SING N N 1  
U6Y N5  C28 SING N N 2  
U6Y C27 C26 SING N N 3  
U6Y C23 C21 SING N N 4  
U6Y C23 C22 SING N N 5  
U6Y O5  C20 DOUB N N 6  
U6Y C28 O6  DOUB N N 7  
U6Y C28 C25 SING N N 8  
U6Y C26 C25 SING N N 9  
U6Y C21 C22 SING N N 10 
U6Y C21 N4  SING N N 11 
U6Y C25 C24 SING N N 12 
U6Y C20 N4  SING N N 13 
U6Y C20 C19 SING N N 14 
U6Y C24 C18 SING N N 15 
U6Y C18 C19 SING N N 16 
U6Y C18 N3  SING N N 17 
U6Y C19 O4  SING N N 18 
U6Y O7  C17 DOUB N N 19 
U6Y N3  C17 SING N N 20 
U6Y O3  C5  DOUB N N 21 
U6Y C17 C4  SING N N 22 
U6Y C5  C6  SING N N 23 
U6Y C5  N1  SING N N 24 
U6Y C6  C7  SING N N 25 
U6Y C14 C13 DOUB Y N 26 
U6Y C14 C15 SING Y N 27 
U6Y C13 C12 SING Y N 28 
U6Y C4  N1  SING N N 29 
U6Y C4  C3  SING N N 30 
U6Y N1  C16 SING N N 31 
U6Y C7  C16 SING N N 32 
U6Y C7  N2  SING N N 33 
U6Y O2  C8  DOUB N N 34 
U6Y C15 C10 DOUB Y N 35 
U6Y C12 C11 DOUB Y N 36 
U6Y C3  C2  SING N N 37 
U6Y C8  N2  SING N N 38 
U6Y C8  O1  SING N N 39 
U6Y C10 C11 SING Y N 40 
U6Y C10 C9  SING N N 41 
U6Y C2  C29 SING N N 42 
U6Y C2  C1  SING N N 43 
U6Y C9  O1  SING N N 44 
U6Y C1  H1  SING N N 45 
U6Y C1  H2  SING N N 46 
U6Y C1  H3  SING N N 47 
U6Y C2  H4  SING N N 48 
U6Y C3  H5  SING N N 49 
U6Y C3  H6  SING N N 50 
U6Y C4  H7  SING N N 51 
U6Y C6  H8  SING N N 52 
U6Y C6  H9  SING N N 53 
U6Y C7  H10 SING N N 54 
U6Y N2  H11 SING N N 55 
U6Y C9  H12 SING N N 56 
U6Y C9  H13 SING N N 57 
U6Y C11 H14 SING N N 58 
U6Y C12 H15 SING N N 59 
U6Y C13 H16 SING N N 60 
U6Y C14 H17 SING N N 61 
U6Y C15 H18 SING N N 62 
U6Y C16 H19 SING N N 63 
U6Y C16 H20 SING N N 64 
U6Y N3  H21 SING N N 65 
U6Y C18 H22 SING N N 66 
U6Y C19 H23 SING N N 67 
U6Y O4  H24 SING N N 68 
U6Y N4  H25 SING N N 69 
U6Y C21 H26 SING N N 70 
U6Y C22 H27 SING N N 71 
U6Y C22 H28 SING N N 72 
U6Y C23 H29 SING N N 73 
U6Y C23 H30 SING N N 74 
U6Y C24 H31 SING N N 75 
U6Y C24 H32 SING N N 76 
U6Y C25 H33 SING N N 77 
U6Y C26 H34 SING N N 78 
U6Y C26 H35 SING N N 79 
U6Y C27 H36 SING N N 80 
U6Y C27 H37 SING N N 81 
U6Y N5  H38 SING N N 82 
U6Y C29 H39 SING N N 83 
U6Y C29 H40 SING N N 84 
U6Y C29 H41 SING N N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U6Y SMILES           ACDLabs              12.01 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)C(=O)NC1CC1)N1CC(CC1=O)NC(=O)OCc1ccccc1"                                                                                                                                                                               
U6Y InChI            InChI                1.06  "InChI=1S/C29H41N5O7/c1-17(2)12-23(34-15-21(14-24(34)35)32-29(40)41-16-18-6-4-3-5-7-18)27(38)33-22(13-19-10-11-30-26(19)37)25(36)28(39)31-20-8-9-20/h3-7,17,19-23,25,36H,8-16H2,1-2H3,(H,30,37)(H,31,39)(H,32,40)(H,33,38)/t19-,21-,22-,23-,25+/m0/s1" 
U6Y InChIKey         InChI                1.06  CJHGCZGBAUVONS-TVLDRFKXSA-N                                                                                                                                                                                                                            
U6Y SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](N1C[C@H](CC1=O)NC(=O)OCc2ccccc2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)C(=O)NC4CC4"                                                                                                                                                        
U6Y SMILES           CACTVS               3.385 "CC(C)C[CH](N1C[CH](CC1=O)NC(=O)OCc2ccccc2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(=O)NC4CC4"                                                                                                                                                                
U6Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](C(=O)NC2CC2)O)N3C[C@H](CC3=O)NC(=O)OCc4ccccc4"                                                                                                                                                        
U6Y SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(C(=O)NC2CC2)O)N3CC(CC3=O)NC(=O)OCc4ccccc4"                                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
U6Y "SYSTEMATIC NAME" ACDLabs              12.01 "benzyl {(3S)-1-[(2S)-1-({(2S,3R)-4-(cyclopropylamino)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-5-oxopyrrolidin-3-yl}carbamate"                                                                        
U6Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(3~{S})-1-[(2~{S})-1-[[(2~{S},3~{R})-4-(cyclopropylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-5-oxidanylidene-pyrrolidin-3-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U6Y "Create component" 2022-08-08 RCSB 
U6Y "Initial release"  2023-04-05 RCSB 
U6Y "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            U6Y 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
