data_VAY
# 
_chem_comp.id                                    VAY 
_chem_comp.name                                  "{(1R,2R,3S,4R)-4-[(5-{4-[(1S)-1-(6-bromopyridin-2-yl)-1-hydroxyethyl]thiophene-2-carbonyl}pyrimidin-4-yl)amino]-2,3-dihydroxycyclopentyl}methyl sulfamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H24 Br N5 O7 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-07-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        614.489 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VAY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6XOG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VAY C4   C1  C  0 1 N N N N N N 34.418 -3.082  26.201 -3.735 -0.343 -0.275 C4   VAY 1  
VAY C5   C2  C  0 1 N N R N N N 33.551 -3.397  24.917 -5.266 -0.466 -0.077 C5   VAY 2  
VAY C6   C3  C  0 1 N N N N N N 32.085 -3.222  25.330 -5.845 0.847  0.454  C6   VAY 3  
VAY C8   C4  C  0 1 Y N N N N N 37.703 -3.592  27.517 -1.080 -2.967 -0.174 C8   VAY 4  
VAY C10  C5  C  0 1 Y N N N N N 39.560 -2.354  26.793 -0.908 -5.060 -1.116 C10  VAY 5  
VAY C13  C6  C  0 1 Y N N N N N 38.369 -3.704  28.763 0.303  -2.995 0.099  C13  VAY 6  
VAY C15  C7  C  0 1 Y N N N N N 38.470 -5.155  30.980 1.251  -0.633 0.019  C15  VAY 7  
VAY C20  C8  C  0 1 Y N N N N N 39.678 -5.772  31.046 1.934  0.451  0.500  C20  VAY 8  
VAY C21  C9  C  0 1 N N S N N N 41.305 -7.167  32.693 2.775  2.754  -0.107 C21  VAY 9  
VAY C22  C10 C  0 1 Y N N N N N 40.659 -8.477  32.309 4.245  2.480  0.084  C22  VAY 10 
VAY C24  C11 C  0 1 Y N N N N N 40.537 -10.197 30.758 5.960  0.948  0.231  C24  VAY 11 
VAY C26  C12 C  0 1 Y N N N N N 39.184 -10.351 32.759 6.467  3.272  0.453  C26  VAY 12 
VAY C27  C13 C  0 1 Y N N N N N 39.734 -9.133  33.149 5.116  3.534  0.278  C27  VAY 13 
VAY C25  C14 C  0 1 Y N N N N N 39.598 -10.888 31.539 6.892  1.953  0.426  C25  VAY 14 
VAY BR28 BR1 BR 0 0 N N N N N N 41.119 -10.887 29.097 6.524  -0.856 0.198  BR28 VAY 15 
VAY N23  N1  N  0 1 Y N N N N N 41.056 -9.024  31.158 4.683  1.236  0.068  N23  VAY 16 
VAY O30  O1  O  0 1 N N N N N N 41.985 -6.390  31.779 2.598  3.671  -1.189 O30  VAY 17 
VAY C29  C15 C  0 1 N N N N N N 41.339 -6.810  34.170 2.199  3.360  1.175  C29  VAY 18 
VAY C19  C16 C  0 1 Y N N N N N 39.942 -6.359  32.288 2.060  1.465  -0.419 C19  VAY 19 
VAY C18  C17 C  0 1 Y N N N N N 38.910 -6.217  33.170 1.501  1.224  -1.611 C18  VAY 20 
VAY S17  S1  S  0 1 Y N N N N N 37.618 -5.342  32.415 0.773  -0.319 -1.644 S17  VAY 21 
VAY C14  C18 C  0 1 N N N N N N 37.710 -4.408  29.865 0.969  -1.860 0.767  C14  VAY 22 
VAY O16  O2  O  0 1 N N N N N N 36.491 -4.310  29.950 1.283  -1.944 1.941  O16  VAY 23 
VAY C12  C19 C  0 1 Y N N N N N 39.621 -3.139  28.999 1.025  -4.130 -0.282 C12  VAY 24 
VAY N11  N2  N  0 1 Y N N N N N 40.185 -2.468  27.988 0.389  -5.124 -0.877 N11  VAY 25 
VAY N9   N3  N  0 1 Y N N N N N 38.359 -2.902  26.561 -1.634 -4.015 -0.777 N9   VAY 26 
VAY N7   N4  N  0 1 N N N N N N 36.485 -4.141  27.324 -1.845 -1.877 0.184  N7   VAY 27 
VAY C3   C20 C  0 1 N N R N N N 35.672 -4.009  26.046 -3.257 -1.815 -0.203 C3   VAY 28 
VAY C2   C21 C  0 1 N N S N N N 34.960 -5.343  25.679 -4.144 -2.447 0.890  C2   VAY 29 
VAY O32  O3  O  0 1 N N N N N N 35.884 -6.183  24.993 -4.474 -3.792 0.534  O32  VAY 30 
VAY C1   C22 C  0 1 N N R N N N 33.838 -4.921  24.662 -5.424 -1.589 0.970  C1   VAY 31 
VAY O31  O4  O  0 1 N N N N N N 34.243 -4.967  23.297 -6.570 -2.385 0.665  O31  VAY 32 
VAY O33  O5  O  0 1 N N N N N N 31.187 -3.527  24.313 -5.714 1.863  -0.542 O33  VAY 33 
VAY S34  S2  S  0 1 N N N N N N 29.829 -4.062  24.654 -6.260 3.219  -0.118 S34  VAY 34 
VAY O35  O6  O  0 1 N N N N N N 29.075 -4.140  23.391 -6.235 4.041  -1.277 O35  VAY 35 
VAY O36  O7  O  0 1 N N N N N N 30.038 -5.362  25.314 -7.443 2.961  0.626  O36  VAY 36 
VAY N37  N5  N  0 1 N N N N N N 29.066 -2.983  25.700 -5.173 3.875  0.945  N37  VAY 37 
VAY H1   H1  H  0 1 N N N N N N 34.715 -2.023  26.223 -3.505 0.091  -1.248 H1   VAY 38 
VAY H2   H2  H  0 1 N N N N N N 33.862 -3.326  27.118 -3.289 0.248  0.525  H2   VAY 39 
VAY H3   H3  H  0 1 N N N N N N 33.833 -2.768  24.060 -5.751 -0.744 -1.013 H3   VAY 40 
VAY H4   H4  H  0 1 N N N N N N 31.930 -2.175  25.631 -6.899 0.708  0.696  H4   VAY 41 
VAY H5   H5  H  0 1 N N N N N N 31.882 -3.883  26.185 -5.304 1.145  1.352  H5   VAY 42 
VAY H6   H6  H  0 1 N N N N N N 40.045 -1.803  26.000 -1.390 -5.894 -1.605 H6   VAY 43 
VAY H7   H7  H  0 1 N N N N N N 40.370 -5.806  30.217 2.334  0.504  1.502  H7   VAY 44 
VAY H8   H8  H  0 1 N N N N N N 38.462 -10.862 33.379 7.171  4.076  0.608  H8   VAY 45 
VAY H9   H9  H  0 1 N N N N N N 39.453 -8.691  34.093 4.750  4.550  0.294  H9   VAY 46 
VAY H10  H10 H  0 1 N N N N N N 39.197 -11.831 31.198 7.936  1.712  0.559  H10  VAY 47 
VAY H11  H11 H  0 1 N N N N N N 42.902 -6.638  31.772 2.941  3.352  -2.035 H11  VAY 48 
VAY H12  H12 H  0 1 N N N N N N 40.743 -7.540  34.738 2.717  4.292  1.400  H12  VAY 49 
VAY H13  H13 H  0 1 N N N N N N 42.379 -6.828  34.528 1.136  3.558  1.037  H13  VAY 50 
VAY H14  H14 H  0 1 N N N N N N 40.920 -5.803  34.313 2.334  2.661  2.000  H14  VAY 51 
VAY H15  H15 H  0 1 N N N N N N 38.900 -6.592  34.183 1.510  1.914  -2.442 H15  VAY 52 
VAY H16  H16 H  0 1 N N N N N N 40.114 -3.238  29.955 2.086  -4.194 -0.093 H16  VAY 53 
VAY H17  H17 H  0 1 N N N N N N 35.906 -3.771  28.050 -1.449 -1.151 0.691  H17  VAY 54 
VAY H18  H18 H  0 1 N N N N N N 36.301 -3.666  25.212 -3.413 -2.313 -1.159 H18  VAY 55 
VAY H19  H19 H  0 1 N N N N N N 34.523 -5.817  26.570 -3.625 -2.431 1.848  H19  VAY 56 
VAY H20  H20 H  0 1 N N N N N N 36.573 -6.451  25.590 -5.031 -4.244 1.182  H20  VAY 57 
VAY H21  H21 H  0 1 N N N N N N 32.927 -5.510  24.843 -5.522 -1.158 1.966  H21  VAY 58 
VAY H22  H22 H  0 1 N N N N N N 34.439 -5.864  23.054 -6.723 -3.109 1.287  H22  VAY 59 
VAY H23  H23 H  0 1 N N N N N N 29.578 -2.930  26.557 -4.368 3.387  1.178  H23  VAY 60 
VAY H24  H24 H  0 1 N N N N N N 29.030 -2.078  25.277 -5.341 4.747  1.334  H24  VAY 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VAY O31  C1  SING N N 1  
VAY O35  S34 DOUB N N 2  
VAY O33  S34 SING N N 3  
VAY O33  C6  SING N N 4  
VAY S34  O36 DOUB N N 5  
VAY S34  N37 SING N N 6  
VAY C1   C5  SING N N 7  
VAY C1   C2  SING N N 8  
VAY C5   C6  SING N N 9  
VAY C5   C4  SING N N 10 
VAY O32  C2  SING N N 11 
VAY C2   C3  SING N N 12 
VAY C3   C4  SING N N 13 
VAY C3   N7  SING N N 14 
VAY N9   C10 DOUB Y N 15 
VAY N9   C8  SING Y N 16 
VAY C10  N11 SING Y N 17 
VAY N7   C8  SING N N 18 
VAY C8   C13 DOUB Y N 19 
VAY N11  C12 DOUB Y N 20 
VAY C13  C12 SING Y N 21 
VAY C13  C14 SING N N 22 
VAY BR28 C24 SING N N 23 
VAY C14  O16 DOUB N N 24 
VAY C14  C15 SING N N 25 
VAY C24  N23 DOUB Y N 26 
VAY C24  C25 SING Y N 27 
VAY C15  C20 DOUB Y N 28 
VAY C15  S17 SING Y N 29 
VAY C20  C19 SING Y N 30 
VAY N23  C22 SING Y N 31 
VAY C25  C26 DOUB Y N 32 
VAY O30  C21 SING N N 33 
VAY C19  C21 SING N N 34 
VAY C19  C18 DOUB Y N 35 
VAY C22  C21 SING N N 36 
VAY C22  C27 DOUB Y N 37 
VAY S17  C18 SING Y N 38 
VAY C21  C29 SING N N 39 
VAY C26  C27 SING Y N 40 
VAY C4   H1  SING N N 41 
VAY C4   H2  SING N N 42 
VAY C5   H3  SING N N 43 
VAY C6   H4  SING N N 44 
VAY C6   H5  SING N N 45 
VAY C10  H6  SING N N 46 
VAY C20  H7  SING N N 47 
VAY C26  H8  SING N N 48 
VAY C27  H9  SING N N 49 
VAY C25  H10 SING N N 50 
VAY O30  H11 SING N N 51 
VAY C29  H12 SING N N 52 
VAY C29  H13 SING N N 53 
VAY C29  H14 SING N N 54 
VAY C18  H15 SING N N 55 
VAY C12  H16 SING N N 56 
VAY N7   H17 SING N N 57 
VAY C3   H18 SING N N 58 
VAY C2   H19 SING N N 59 
VAY O32  H20 SING N N 60 
VAY C1   H21 SING N N 61 
VAY O31  H22 SING N N 62 
VAY N37  H23 SING N N 63 
VAY N37  H24 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VAY SMILES           ACDLabs              12.01 "C1C(COS(=O)(N)=O)C(C(C1Nc2c(cncn2)C(c4cc(C(C)(c3cccc(n3)Br)O)cs4)=O)O)O"                                                                                                                                                                    
VAY InChI            InChI                1.03  "InChI=1S/C22H24BrN5O7S2/c1-22(32,16-3-2-4-17(23)28-16)12-6-15(36-9-12)19(30)13-7-25-10-26-21(13)27-14-5-11(18(29)20(14)31)8-35-37(24,33)34/h2-4,6-7,9-11,14,18,20,29,31-32H,5,8H2,1H3,(H2,24,33,34)(H,25,26,27)/t11-,14-,18-,20+,22+/m1/s1" 
VAY InChIKey         InChI                1.03  IZYVMHSGDZFGFW-SULQKKJVSA-N                                                                                                                                                                                                                  
VAY SMILES_CANONICAL CACTVS               3.385 "C[C@](O)(c1csc(c1)C(=O)c2cncnc2N[C@@H]3C[C@H](CO[S](N)(=O)=O)[C@@H](O)[C@H]3O)c4cccc(Br)n4"                                                                                                                                                 
VAY SMILES           CACTVS               3.385 "C[C](O)(c1csc(c1)C(=O)c2cncnc2N[CH]3C[CH](CO[S](N)(=O)=O)[CH](O)[CH]3O)c4cccc(Br)n4"                                                                                                                                                        
VAY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@](c1cccc(n1)Br)(c2cc(sc2)C(=O)c3cncnc3N[C@@H]4C[C@@H]([C@H]([C@H]4O)O)COS(=O)(=O)N)O"                                                                                                                                                  
VAY SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc(n1)Br)(c2cc(sc2)C(=O)c3cncnc3NC4CC(C(C4O)O)COS(=O)(=O)N)O"                                                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VAY "SYSTEMATIC NAME" ACDLabs              12.01 "{(1R,2R,3S,4R)-4-[(5-{4-[(1S)-1-(6-bromopyridin-2-yl)-1-hydroxyethyl]thiophene-2-carbonyl}pyrimidin-4-yl)amino]-2,3-dihydroxycyclopentyl}methyl sulfamate"                          
VAY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(1~{R},2~{R},3~{S},4~{R})-4-[[5-[4-[(1~{S})-1-(6-bromanylpyridin-2-yl)-1-oxidanyl-ethyl]thiophen-2-yl]carbonylpyrimidin-4-yl]amino]-2,3-bis(oxidanyl)cyclopentyl]methyl sulfamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VAY "Create component" 2020-07-22 RCSB 
VAY "Initial release"  2021-03-10 RCSB 
VAY "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VAY 
_pdbx_chem_comp_pcm.modified_residue_id                GLY 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               C-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               N37 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   C 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
