data_35Z
# 
_chem_comp.id                                    35Z 
_chem_comp.name                                  "2-[2-(3-methoxyphenyl)pyrimidin-4-yl]-1'-prop-2-enoyl-spiro[5,6-dihydro-1~{H}-pyrrolo[3,2-c]pyridine-7,4'-piperidine]-4-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H25 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-06-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        443.498 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     35Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7OXB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
35Z C1  C1  C 0 1 N N N N N N 52.624 -4.070 -16.352 9.911  -0.482 -0.250 C1  35Z 1  
35Z C3  C2  C 0 1 Y N N N N N 53.392 -2.226 -17.700 7.536  -0.444 -0.143 C3  35Z 2  
35Z C4  C3  C 0 1 Y N N N N N 52.720 -1.176 -17.074 7.611  0.939  -0.237 C4  35Z 3  
35Z C5  C4  C 0 1 Y N N N N N 52.451 -0.009 -17.776 6.458  1.700  -0.233 C5  35Z 4  
35Z C6  C5  C 0 1 Y N N N N N 52.846 0.130  -19.097 5.223  1.089  -0.136 C6  35Z 5  
35Z C7  C6  C 0 1 Y N N N N N 53.532 -0.912 -19.753 5.139  -0.299 -0.042 C7  35Z 6  
35Z C8  C7  C 0 1 Y N N N N N 53.793 -2.095 -19.024 6.302  -1.066 -0.052 C8  35Z 7  
35Z N10 N1  N 0 1 Y N N N N N 54.824 -1.626 -21.767 3.755  -2.280 0.151  N10 35Z 8  
35Z C11 C8  C 0 1 Y N N N N N 55.214 -1.485 -23.064 2.593  -2.906 0.247  C11 35Z 9  
35Z C12 C9  C 0 1 Y N N N N N 54.727 -0.467 -23.808 1.424  -2.167 0.254  C12 35Z 10 
35Z C15 C10 C 0 1 Y N N N N N 53.265 1.560  -23.947 0.297  0.061  0.164  C15 35Z 11 
35Z C16 C11 C 0 1 Y N N N N N 53.509 1.899  -25.278 0.263  1.423  0.083  C16 35Z 12 
35Z C17 C12 C 0 1 Y N N N N N 52.758 3.031  -25.519 -1.086 1.796  0.129  C17 35Z 13 
35Z C18 C13 C 0 1 Y N N N N N 52.075 3.336  -24.311 -1.838 0.630  0.228  C18 35Z 14 
35Z C21 C14 C 0 1 N N N N N N 50.583 4.827  -25.591 -3.775 2.002  0.912  C21 35Z 15 
35Z N22 N2  N 0 1 N N N N N N 51.537 4.723  -26.697 -3.066 3.146  0.351  N22 35Z 16 
35Z C23 C15 C 0 1 N N N N N N 52.587 3.866  -26.712 -1.742 3.115  0.076  C23 35Z 17 
35Z C30 C16 C 0 1 N N N N N N 50.413 6.557  -20.799 -6.874 -1.254 -0.539 C30 35Z 18 
35Z C32 C17 C 0 1 N N N N N N 51.476 7.449  -20.189 -7.444 -2.201 0.432  C32 35Z 19 
35Z C33 C18 C 0 1 N N N N N N 51.808 7.084  -18.741 -8.439 -3.006 0.070  C33 35Z 20 
35Z O2  O1  O 0 1 N N N N N N 53.675 -3.382 -17.035 8.673  -1.189 -0.147 O2  35Z 21 
35Z C9  C19 C 0 1 Y N N N N N 53.950 -0.753 -21.178 3.814  -0.958 0.063  C9  35Z 22 
35Z C13 C20 C 0 1 Y N N N N N 53.826 0.431  -23.195 1.516  -0.773 0.160  C13 35Z 23 
35Z N14 N3  N 0 1 Y N N N N N 53.474 0.251  -21.907 2.720  -0.211 0.066  N14 35Z 24 
35Z N19 N4  N 0 1 Y N N N N N 52.410 2.452  -23.427 -0.998 -0.405 0.256  N19 35Z 25 
35Z C20 C21 C 0 1 N N N N N N 51.163 4.531  -24.202 -3.344 0.676  0.284  C20 35Z 26 
35Z O24 O2  O 0 1 N N N N N N 53.356 3.796  -27.654 -1.123 4.124  -0.202 O24 35Z 27 
35Z C25 C22 C 0 1 N N N N N N 50.039 4.200  -23.193 -3.911 0.571  -1.133 C25 35Z 28 
35Z C26 C23 C 0 1 N N N N N N 49.297 5.462  -22.740 -5.440 0.657  -1.074 C26 35Z 29 
35Z N27 N5  N 0 1 N N N N N N 50.317 6.340  -22.146 -5.935 -0.370 -0.147 N27 35Z 30 
35Z C28 C24 C 0 1 N N N N N N 51.223 6.887  -23.177 -5.389 -0.413 1.216  C28 35Z 31 
35Z C29 C25 C 0 1 N N N N N N 52.040 5.709  -23.733 -3.861 -0.486 1.133  C29 35Z 32 
35Z O31 O3  O 0 1 N N N N N N 49.607 6.040  -20.050 -7.249 -1.269 -1.696 O31 35Z 33 
35Z H1  H1  H 0 1 N N N N N N 53.027 -4.975 -15.874 9.929  0.085  -1.181 H1  35Z 34 
35Z H2  H2  H 0 1 N N N N N N 52.193 -3.411 -15.584 10.010 0.201  0.594  H2  35Z 35 
35Z H3  H3  H 0 1 N N N N N N 51.843 -4.353 -17.072 10.737 -1.193 -0.242 H3  35Z 36 
35Z H4  H4  H 0 1 N N N N N N 52.409 -1.271 -16.044 8.575  1.422  -0.313 H4  35Z 37 
35Z H5  H5  H 0 1 N N N N N N 51.928 0.800  -17.287 6.522  2.776  -0.306 H5  35Z 38 
35Z H6  H6  H 0 1 N N N N N N 52.626 1.044  -19.628 4.324  1.687  -0.132 H6  35Z 39 
35Z H7  H7  H 0 1 N N N N N N 54.313 -2.911 -19.504 6.241  -2.142 0.021  H7  35Z 40 
35Z H8  H8  H 0 1 N N N N N N 55.912 -2.186 -23.498 2.558  -3.983 0.318  H8  35Z 41 
35Z H9  H9  H 0 1 N N N N N N 55.018 -0.344 -24.841 0.463  -2.654 0.331  H9  35Z 42 
35Z H10 H10 H 0 1 N N N N N N 54.152 1.383  -25.975 1.112  2.085  0.001  H10 35Z 43 
35Z H11 H11 H 0 1 N N N N N N 50.182 5.851  -25.582 -3.585 1.962  1.985  H11 35Z 44 
35Z H12 H12 H 0 1 N N N N N N 49.766 4.115  -25.778 -4.844 2.138  0.749  H12 35Z 45 
35Z H13 H13 H 0 1 N N N N N N 51.406 5.320  -27.489 -3.562 3.960  0.169  H13 35Z 46 
35Z H14 H14 H 0 1 N N N N N N 51.951 8.259  -20.722 -7.054 -2.242 1.438  H14 35Z 47 
35Z H16 H16 H 0 1 N N N N N N 52.552 7.649  -18.199 -8.828 -2.964 -0.936 H16 35Z 48 
35Z H17 H17 H 0 1 N N N N N N 51.299 6.261  -18.261 -8.857 -3.701 0.783  H17 35Z 49 
35Z H19 H19 H 0 1 N N N N N N 52.076 2.436  -22.484 -1.256 -1.337 0.332  H19 35Z 50 
35Z H20 H20 H 0 1 N N N N N N 49.322 3.516  -23.670 -3.524 1.389  -1.741 H20 35Z 51 
35Z H21 H21 H 0 1 N N N N N N 50.482 3.711  -22.313 -3.617 -0.381 -1.573 H21 35Z 52 
35Z H22 H22 H 0 1 N N N N N N 48.822 5.956  -23.600 -5.737 1.644  -0.720 H22 35Z 53 
35Z H23 H23 H 0 1 N N N N N N 48.530 5.207  -21.994 -5.854 0.482  -2.067 H23 35Z 54 
35Z H24 H24 H 0 1 N N N N N N 51.895 7.635  -22.730 -5.683 0.487  1.757  H24 35Z 55 
35Z H25 H25 H 0 1 N N N N N N 50.639 7.354  -23.983 -5.771 -1.292 1.735  H25 35Z 56 
35Z H26 H26 H 0 1 N N N N N N 52.716 5.349  -22.944 -3.566 -1.430 0.675  H26 35Z 57 
35Z H27 H27 H 0 1 N N N N N N 52.632 6.067  -24.588 -3.439 -0.421 2.136  H27 35Z 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
35Z O24 C23 DOUB N N 1  
35Z C23 N22 SING N N 2  
35Z C23 C17 SING N N 3  
35Z N22 C21 SING N N 4  
35Z C21 C20 SING N N 5  
35Z C17 C16 SING Y N 6  
35Z C17 C18 DOUB Y N 7  
35Z C16 C15 DOUB Y N 8  
35Z C18 C20 SING N N 9  
35Z C18 N19 SING Y N 10 
35Z C20 C29 SING N N 11 
35Z C20 C25 SING N N 12 
35Z C15 N19 SING Y N 13 
35Z C15 C13 SING N N 14 
35Z C12 C13 DOUB Y N 15 
35Z C12 C11 SING Y N 16 
35Z C29 C28 SING N N 17 
35Z C13 N14 SING Y N 18 
35Z C25 C26 SING N N 19 
35Z C28 N27 SING N N 20 
35Z C11 N10 DOUB Y N 21 
35Z C26 N27 SING N N 22 
35Z N27 C30 SING N N 23 
35Z N14 C9  DOUB Y N 24 
35Z N10 C9  SING Y N 25 
35Z C9  C7  SING N N 26 
35Z C30 C32 SING N N 27 
35Z C30 O31 DOUB N N 28 
35Z C32 C33 DOUB N N 29 
35Z C7  C6  DOUB Y N 30 
35Z C7  C8  SING Y N 31 
35Z C6  C5  SING Y N 32 
35Z C8  C3  DOUB Y N 33 
35Z C5  C4  DOUB Y N 34 
35Z C3  C4  SING Y N 35 
35Z C3  O2  SING N N 36 
35Z O2  C1  SING N N 37 
35Z C1  H1  SING N N 38 
35Z C1  H2  SING N N 39 
35Z C1  H3  SING N N 40 
35Z C4  H4  SING N N 41 
35Z C5  H5  SING N N 42 
35Z C6  H6  SING N N 43 
35Z C8  H7  SING N N 44 
35Z C11 H8  SING N N 45 
35Z C12 H9  SING N N 46 
35Z C16 H10 SING N N 47 
35Z C21 H11 SING N N 48 
35Z C21 H12 SING N N 49 
35Z N22 H13 SING N N 50 
35Z C32 H14 SING N N 51 
35Z C33 H16 SING N N 52 
35Z C33 H17 SING N N 53 
35Z N19 H19 SING N N 54 
35Z C25 H20 SING N N 55 
35Z C25 H21 SING N N 56 
35Z C26 H22 SING N N 57 
35Z C26 H23 SING N N 58 
35Z C28 H24 SING N N 59 
35Z C28 H25 SING N N 60 
35Z C29 H26 SING N N 61 
35Z C29 H27 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
35Z InChI            InChI                1.03  "InChI=1S/C25H25N5O3/c1-3-21(31)30-11-8-25(9-12-30)15-27-24(32)18-14-20(28-22(18)25)19-7-10-26-23(29-19)16-5-4-6-17(13-16)33-2/h3-7,10,13-14,28H,1,8-9,11-12,15H2,2H3,(H,27,32)" 
35Z InChIKey         InChI                1.03  XYZWQPFTGADMOX-UHFFFAOYSA-N                                                                                                                                                      
35Z SMILES_CANONICAL CACTVS               3.385 "COc1cccc(c1)c2nccc(n2)c3[nH]c4c(c3)C(=O)NCC45CCN(CC5)C(=O)C=C"                                                                                                                  
35Z SMILES           CACTVS               3.385 "COc1cccc(c1)c2nccc(n2)c3[nH]c4c(c3)C(=O)NCC45CCN(CC5)C(=O)C=C"                                                                                                                  
35Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cccc(c1)c2nccc(n2)c3cc4c([nH]3)C5(CCN(CC5)C(=O)C=C)CNC4=O"                                                                                                                  
35Z SMILES           "OpenEye OEToolkits" 2.0.7 "COc1cccc(c1)c2nccc(n2)c3cc4c([nH]3)C5(CCN(CC5)C(=O)C=C)CNC4=O"                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           35Z 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[2-(3-methoxyphenyl)pyrimidin-4-yl]-1'-prop-2-enoyl-spiro[5,6-dihydro-1~{H}-pyrrolo[3,2-c]pyridine-7,4'-piperidine]-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
35Z "Create component" 2021-06-23 PDBE 
35Z "Initial release"  2021-10-20 RCSB 
35Z "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            35Z 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C33 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
