data_3XZ
# 
_chem_comp.id                                    3XZ 
_chem_comp.name                                  "bis{[(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxytetrahydrofuran-2-yl]methyl} hydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H25 N10 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-08 
_chem_comp.pdbx_modified_date                    2015-07-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        564.448 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3XZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4TYS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3XZ N1    N1  N 0 1 Y N N 38.796 35.970 44.500 -9.111  2.666  -1.381 N1    3XZ 1  
3XZ N3    N2  N 0 1 Y N N 36.571 35.356 45.097 -7.292  2.669  0.046  N3    3XZ 2  
3XZ C4    C1  C 0 1 Y N N 36.835 35.483 46.428 -6.929  1.452  -0.347 C4    3XZ 3  
3XZ C5    C2  C 0 1 Y N N 38.180 35.888 46.858 -7.698  0.790  -1.318 C5    3XZ 4  
3XZ C6    C3  C 0 1 Y N N 39.177 36.131 45.796 -8.826  1.450  -1.835 C6    3XZ 5  
3XZ C8    C4  C 0 1 Y N N 36.927 35.599 48.602 -6.066  -0.531 -0.776 C8    3XZ 6  
3XZ C15   C5  C 0 1 Y N N 30.200 34.417 54.580 7.553   1.530  0.821  C15   3XZ 7  
3XZ O3P   O1  O 0 1 N N N 34.869 28.590 49.615 0.554   -2.991 1.792  O3P   3XZ 8  
3XZ P     P1  P 0 1 N N N 34.643 29.990 50.155 -0.011  -2.420 0.549  P     3XZ 9  
3XZ O1P   O2  O 0 1 N N N 33.260 30.376 50.688 1.164   -1.727 -0.305 O1P   3XZ 10 
3XZ O2P   O3  O 0 1 N N N 35.855 30.752 50.622 -0.688  -3.592 -0.322 O2P   3XZ 11 
3XZ "O5'" O4  O 0 1 N N N 34.042 30.357 48.908 -1.124  -1.318 0.923  "O5'" 3XZ 12 
3XZ "C5'" C6  C 0 1 N N N 34.120 31.182 47.752 -2.244  -1.598 1.766  "C5'" 3XZ 13 
3XZ "C4'" C7  C 0 1 N N R 33.846 32.592 48.234 -3.099  -0.337 1.914  "C4'" 3XZ 14 
3XZ "C3'" C8  C 0 1 N N S 32.990 33.395 47.253 -4.315  -0.608 2.835  "C3'" 3XZ 15 
3XZ "O3'" O5  O 0 1 N N N 31.935 34.035 47.980 -3.968  -0.413 4.208  "O3'" 3XZ 16 
3XZ "C2'" C9  C 0 1 N N N 33.870 34.509 46.709 -5.325  0.467  2.363  "C2'" 3XZ 17 
3XZ "C1'" C10 C 0 1 N N R 34.959 34.583 47.768 -4.841  0.844  0.950  "C1'" 3XZ 18 
3XZ "O4'" O6  O 0 1 N N N 35.076 33.291 48.378 -3.704  0.017  0.652  "O4'" 3XZ 19 
3XZ N9    N3  N 0 1 Y N N 36.138 35.328 47.547 -5.907  0.595  -0.024 N9    3XZ 20 
3XZ N7    N4  N 0 1 Y N N 38.176 35.930 48.196 -7.117  -0.415 -1.535 N7    3XZ 21 
3XZ C2    C11 C 0 1 Y N N 37.535 35.596 44.176 -8.357  3.249  -0.466 C2    3XZ 22 
3XZ N6    N5  N 0 1 N N N 40.430 36.489 46.143 -9.621  0.848  -2.794 N6    3XZ 23 
3XZ C5A   C12 C 0 1 N N N 32.669 31.795 50.852 2.351   -2.418 -0.700 C5A   3XZ 24 
3XZ C4A   C13 C 0 1 N N R 33.558 32.936 51.334 3.252   -1.471 -1.495 C4A   3XZ 25 
3XZ C3A   C14 C 0 1 N N S 34.225 32.592 52.657 4.543   -2.198 -1.948 C3A   3XZ 26 
3XZ O3A   O7  O 0 1 N N N 35.647 32.630 52.513 4.336   -2.881 -3.186 O3A   3XZ 27 
3XZ C2A   C15 C 0 1 N N N 33.775 33.646 53.651 5.533   -1.022 -2.126 C2A   3XZ 28 
3XZ C1A   C16 C 0 1 N N R 32.853 34.585 52.884 4.927   0.113  -1.278 C1A   3XZ 29 
3XZ O4A   O8  O 0 1 N N N 32.768 34.112 51.537 3.743   -0.408 -0.651 O4A   3XZ 30 
3XZ N19   N6  N 0 1 Y N N 31.924 35.090 53.307 5.887   0.538  -0.255 N19   3XZ 31 
3XZ C14   C17 C 0 1 Y N N 30.830 34.326 53.256 6.898   1.450  -0.419 C14   3XZ 32 
3XZ N17   N7  N 0 1 Y N N 30.972 35.235 55.319 6.915   0.683  1.664  N17   3XZ 33 
3XZ C18   C18 C 0 1 Y N N 32.009 35.633 54.536 5.939   0.097  1.034  C18   3XZ 34 
3XZ N13   N8  N 0 1 Y N N 30.245 33.554 52.310 7.333   2.197  -1.429 N13   3XZ 35 
3XZ C12   C19 C 0 1 Y N N 29.108 32.884 52.572 8.362   3.003  -1.273 C12   3XZ 36 
3XZ N11   N9  N 0 1 Y N N 28.476 32.920 53.760 9.008   3.113  -0.126 N11   3XZ 37 
3XZ C16   C20 C 0 1 Y N N 28.949 33.650 54.793 8.646   2.405  0.939  C16   3XZ 38 
3XZ N16   N10 N 0 1 N N N 28.303 33.678 55.983 9.326   2.532  2.137  N16   3XZ 39 
3XZ H1    H1  H 0 1 N N N 36.608 35.558 49.633 -5.415  -1.392 -0.747 H1    3XZ 40 
3XZ H2    H2  H 0 1 N N N 36.631 30.216 50.505 -1.080  -3.289 -1.152 H2    3XZ 41 
3XZ H3    H3  H 0 1 N N N 33.366 30.877 47.012 -2.843  -2.393 1.323  H3    3XZ 42 
3XZ H4    H4  H 0 1 N N N 35.122 31.118 47.303 -1.890  -1.913 2.748  H4    3XZ 43 
3XZ H5    H5  H 0 1 N N N 33.322 32.543 49.200 -2.500  0.489  2.297  H5    3XZ 44 
3XZ H6    H6  H 0 1 N N N 32.614 32.754 46.442 -4.710  -1.611 2.674  H6    3XZ 45 
3XZ H7    H7  H 0 1 N N N 31.354 33.376 48.342 -4.697  -0.571 4.824  H7    3XZ 46 
3XZ H8    H8  H 0 1 N N N 34.285 34.248 45.724 -6.332  0.053  2.324  H8    3XZ 47 
3XZ H9    H9  H 0 1 N N N 33.317 35.457 46.635 -5.293  1.335  3.022  H9    3XZ 48 
3XZ H10   H10 H 0 1 N N N 34.458 35.165 48.555 -4.552  1.895  0.925  H10   3XZ 49 
3XZ H11   H11 H 0 1 N N N 37.286 35.484 43.131 -8.625  4.238  -0.125 H11   3XZ 50 
3XZ H12   H12 H 0 1 N N N 40.984 36.605 45.319 -10.397 1.314  -3.143 H12   3XZ 51 
3XZ H13   H13 H 0 1 N N N 40.402 37.351 46.649 -9.403  -0.040 -3.117 H13   3XZ 52 
3XZ H14   H14 H 0 1 N N N 32.276 32.092 49.868 2.881   -2.765 0.187  H14   3XZ 53 
3XZ H15   H15 H 0 1 N N N 31.839 31.713 51.569 2.084   -3.273 -1.321 H15   3XZ 54 
3XZ H16   H16 H 0 1 N N N 34.336 33.126 50.580 2.717   -1.063 -2.353 H16   3XZ 55 
3XZ H17   H17 H 0 1 N N N 33.890 31.599 52.993 4.892   -2.888 -1.179 H17   3XZ 56 
3XZ H18   H18 H 0 1 N N N 36.056 32.414 53.343 5.115   -3.352 -3.511 H18   3XZ 57 
3XZ H19   H19 H 0 1 N N N 33.233 33.177 54.486 6.520   -1.293 -1.751 H19   3XZ 58 
3XZ H20   H20 H 0 1 N N N 34.643 34.198 54.041 5.592   -0.728 -3.174 H20   3XZ 59 
3XZ H21   H21 H 0 1 N N N 33.540 35.432 52.743 4.670   0.957  -1.917 H21   3XZ 60 
3XZ H22   H22 H 0 1 N N N 32.797 36.297 54.857 5.269   -0.629 1.469  H22   3XZ 61 
3XZ H23   H23 H 0 1 N N N 28.678 32.283 51.784 8.689   3.596  -2.113 H23   3XZ 62 
3XZ H24   H24 H 0 1 N N N 27.487 33.102 55.934 9.049   2.013  2.909  H24   3XZ 63 
3XZ H25   H25 H 0 1 N N N 28.910 33.335 56.700 10.079  3.139  2.206  H25   3XZ 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3XZ C2    N1    DOUB Y N 1  
3XZ C2    N3    SING Y N 2  
3XZ N1    C6    SING Y N 3  
3XZ N3    C4    DOUB Y N 4  
3XZ C6    N6    SING N N 5  
3XZ C6    C5    DOUB Y N 6  
3XZ C4    C5    SING Y N 7  
3XZ C4    N9    SING Y N 8  
3XZ "C2'" "C3'" SING N N 9  
3XZ "C2'" "C1'" SING N N 10 
3XZ C5    N7    SING Y N 11 
3XZ "C3'" "O3'" SING N N 12 
3XZ "C3'" "C4'" SING N N 13 
3XZ N9    "C1'" SING N N 14 
3XZ N9    C8    SING Y N 15 
3XZ "C5'" "C4'" SING N N 16 
3XZ "C5'" "O5'" SING N N 17 
3XZ "C1'" "O4'" SING N N 18 
3XZ N7    C8    DOUB Y N 19 
3XZ "C4'" "O4'" SING N N 20 
3XZ "O5'" P     SING N N 21 
3XZ O3P   P     DOUB N N 22 
3XZ P     O2P   SING N N 23 
3XZ P     O1P   SING N N 24 
3XZ O1P   C5A   SING N N 25 
3XZ C5A   C4A   SING N N 26 
3XZ C4A   O4A   SING N N 27 
3XZ C4A   C3A   SING N N 28 
3XZ O4A   C1A   SING N N 29 
3XZ N13   C12   DOUB Y N 30 
3XZ N13   C14   SING Y N 31 
3XZ O3A   C3A   SING N N 32 
3XZ C12   N11   SING Y N 33 
3XZ C3A   C2A   SING N N 34 
3XZ C1A   N19   SING N N 35 
3XZ C1A   C2A   SING N N 36 
3XZ C14   N19   SING Y N 37 
3XZ C14   C15   DOUB Y N 38 
3XZ N19   C18   SING Y N 39 
3XZ N11   C16   DOUB Y N 40 
3XZ C18   N17   DOUB Y N 41 
3XZ C15   C16   SING Y N 42 
3XZ C15   N17   SING Y N 43 
3XZ C16   N16   SING N N 44 
3XZ C8    H1    SING N N 45 
3XZ O2P   H2    SING N N 46 
3XZ "C5'" H3    SING N N 47 
3XZ "C5'" H4    SING N N 48 
3XZ "C4'" H5    SING N N 49 
3XZ "C3'" H6    SING N N 50 
3XZ "O3'" H7    SING N N 51 
3XZ "C2'" H8    SING N N 52 
3XZ "C2'" H9    SING N N 53 
3XZ "C1'" H10   SING N N 54 
3XZ C2    H11   SING N N 55 
3XZ N6    H12   SING N N 56 
3XZ N6    H13   SING N N 57 
3XZ C5A   H14   SING N N 58 
3XZ C5A   H15   SING N N 59 
3XZ C4A   H16   SING N N 60 
3XZ C3A   H17   SING N N 61 
3XZ O3A   H18   SING N N 62 
3XZ C2A   H19   SING N N 63 
3XZ C2A   H20   SING N N 64 
3XZ C1A   H21   SING N N 65 
3XZ C18   H22   SING N N 66 
3XZ C12   H23   SING N N 67 
3XZ N16   H24   SING N N 68 
3XZ N16   H25   SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3XZ SMILES           ACDLabs              12.01 "O=P(OCC3OC(n1c2ncnc(N)c2nc1)CC3O)(O)OCC6OC(n5cnc4c(ncnc45)N)CC6O" 
3XZ InChI            InChI                1.03  
"InChI=1S/C20H25N10O8P/c21-17-15-19(25-5-23-17)29(7-27-15)13-1-9(31)11(37-13)3-35-39(33,34)36-4-12-10(32)2-14(38-12)30-8-28-16-18(22)24-6-26-20(16)30/h5-14,31-32H,1-4H2,(H,33,34)(H2,21,23,25)(H2,22,24,26)/t9-,10-,11+,12+,13+,14+/m0/s1" 
3XZ InChIKey         InChI                1.03  PPQXTUORNPDZDR-PRSXHHODSA-N 
3XZ SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)OC[C@H]4O[C@H](C[C@@H]4O)n5cnc6c(N)ncnc56)O3" 
3XZ SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(=O)OC[CH]4O[CH](C[CH]4O)n5cnc6c(N)ncnc56)O3" 
3XZ SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OC[C@@H]4[C@H](C[C@@H](O4)n5cnc6c5ncnc6N)O)O)N" 
3XZ SMILES           "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)C3CC(C(O3)COP(=O)(O)OCC4C(CC(O4)n5cnc6c5ncnc6N)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3XZ "SYSTEMATIC NAME" ACDLabs              12.01 "bis{[(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxytetrahydrofuran-2-yl]methyl} hydrogen phosphate (non-preferred name)" 
3XZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "bis[[(2R,3S,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-oxolan-2-yl]methyl] hydrogen phosphate"                                 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3XZ "Create component" 2014-12-08 RCSB 
3XZ "Initial release"  2015-07-22 RCSB 
# 
