data_6PZ
#

_chem_comp.id                                   6PZ
_chem_comp.name                                 "5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-non-2-ulopyranosonic acid"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H22 N2 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(2~{S},4~{S},5~{S},6~{S})-5-acetamido-6-[(1~{S},2~{S})-1-acetamido-2-oxidanyl-propyl]-2,4-bis(oxidanyl)oxane-2-carboxyl
 ic acid; Pseudaminic acid; 5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-non-2-ulosonic acid;
5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-L-manno-non-2-ulosonic acid;
5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-manno-non-2-ulosonic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-05-19
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       334.322
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6PZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5JSE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  6PZ  
;(2~{S},4~{S},5~{S},6~{S})-5-acetamido-6-[(1~{S},2~{S})-1-acetamido-2-oxidanyl-propyl]-2,4-bis(oxidanyl)oxane-2-carboxyl
 ic acid
;
  PDB  ?  
2  6PZ  "Pseudaminic acid"  PDB  ?  
3  6PZ  "5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-non-2-ulosonic acid"  PDB  ?  
4  6PZ  "5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-L-manno-non-2-ulosonic acid"  PDB  ?  
5  6PZ  "5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-manno-non-2-ulosonic acid"  PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6PZ  N1    N1   N  0  1  N  N  N  -31.425  -6.596  -64.837   2.419  -0.486   0.698  N1    6PZ   1  
6PZ  C7    C7   C  0  1  N  N  S  -30.020  -6.143  -64.669   1.298  -0.931  -0.134  C7    6PZ   2  
6PZ  C8    C8   C  0  1  N  N  S  -29.624  -6.071  -63.179   1.337  -2.454  -0.270  C8    6PZ   3  
6PZ  C9    C9   C  0  1  N  N  N  -29.831  -7.375  -62.408   1.373  -3.090   1.121  C9    6PZ   4  
6PZ  O8    O8   O  0  1  N  N  N  -30.384  -5.018  -62.569   2.504  -2.838  -1.000  O8    6PZ   5  
6PZ  C6    C6   C  0  1  N  N  S  -29.031  -6.998  -65.484  -0.020  -0.511   0.519  C6    6PZ   6  
6PZ  O6    O6   O  0  1  N  N  N  -27.708  -6.384  -65.454  -1.113  -0.938  -0.296  O6    6PZ   7  
6PZ  C5    C5   C  0  1  N  N  S  -29.394  -7.137  -66.963  -0.056   1.013   0.662  C5    6PZ   8  
6PZ  N5    N2   N  0  1  N  N  N  -29.555  -5.803  -67.605   0.108   1.632  -0.656  N5    6PZ   9  
6PZ  C4    C4   C  0  1  N  N  S  -28.303  -7.939  -67.681  -1.403   1.430   1.261  C4    6PZ  10  
6PZ  O4    O4   O  0  1  N  N  N  -28.590  -7.992  -69.086  -1.475   2.856   1.329  O4    6PZ  11  
6PZ  C3    C3   C  0  1  N  N  N  -26.918  -7.318  -67.459  -2.531   0.903   0.369  C3    6PZ  12  
6PZ  C2    C2   C  0  1  N  N  S  -26.588  -7.162  -65.970  -2.400  -0.617   0.238  C2    6PZ  13  
6PZ  C1    C1   C  0  1  N  N  N  -25.386  -6.273  -65.660  -3.471  -1.136  -0.686  C1    6PZ  14  
6PZ  O1A   O1B  O  0  1  N  N  N  -24.228  -6.666  -65.897  -3.168  -1.800  -1.649  O1A   6PZ  15  
6PZ  O1B   O1A  O  0  1  N  N  N  -25.560  -5.151  -65.172  -4.761  -0.862  -0.438  O1B   6PZ  16  
6PZ  C10A  C10  C  0  0  N  N  N  -32.442  -5.980  -65.316   3.627  -0.271   0.142  C10A  6PZ  17  
6PZ  O10A  O10  O  0  0  N  N  N  -32.398  -4.754  -65.580   3.787  -0.446  -1.047  O10A  6PZ  18  
6PZ  C11A  C11  C  0  0  N  N  N  -33.751  -6.709  -65.490   4.780   0.186   0.998  C11A  6PZ  19  
6PZ  C10   C12  C  0  1  N  N  N  -30.576  -5.387  -68.264   0.604   2.881  -0.757  C10   6PZ  20  
6PZ  O10   O12  O  0  1  N  N  N  -31.579  -6.114  -68.454   0.914   3.493   0.243  O10   6PZ  21  
6PZ  C11   C13  C  0  1  N  N  N  -30.588  -3.984  -68.820   0.772   3.518  -2.112  C11   6PZ  22  
6PZ  H1    H1   H  0  1  N  N  N  -31.606  -7.529  -64.527   2.290  -0.343   1.649  H1    6PZ  23  
6PZ  H7    H2   H  0  1  N  N  N  -29.955  -5.119  -65.064   1.376  -0.475  -1.121  H7    6PZ  24  
6PZ  H8    H3   H  0  1  N  N  N  -28.555  -5.817  -63.130   0.448  -2.794  -0.802  H8    6PZ  25  
6PZ  H92   H4   H  0  1  N  N  N  -29.525  -7.235  -61.361   0.483  -2.798   1.678  H92   6PZ  26  
6PZ  H91   H5   H  0  1  N  N  N  -30.893  -7.658  -62.445   1.401  -4.175   1.023  H91   6PZ  27  
6PZ  H6A   H6   H  0  1  N  N  N  -29.224  -8.171  -62.864   2.262  -2.750   1.652  H6A   6PZ  28  
6PZ  HO8   H7   H  0  1  N  Y  N  -30.156  -4.955  -61.649   2.566  -2.439  -1.879  HO8   6PZ  29  
6PZ  H6    H8   H  0  1  N  N  N  -28.984  -8.002  -65.036  -0.100  -0.970   1.505  H6    6PZ  30  
6PZ  H5    H9   H  0  1  N  N  N  -30.342  -7.690  -67.040   0.751   1.337   1.319  H5    6PZ  31  
6PZ  HN5   H10  H  0  1  N  N  N  -28.790  -5.166  -67.514  -0.141   1.143  -1.456  HN5   6PZ  32  
6PZ  H4    H11  H  0  1  N  N  N  -28.295  -8.958  -67.267  -1.503   1.010   2.262  H4    6PZ  33  
6PZ  HO4   H12  H  0  1  N  Y  N  -29.448  -8.377  -69.220  -2.306   3.191   1.693  HO4   6PZ  34  
6PZ  H32   H13  H  0  1  N  N  N  -26.160  -7.965  -67.924  -3.494   1.148   0.817  H32   6PZ  35  
6PZ  H31   H14  H  0  1  N  N  N  -26.894  -6.326  -67.933  -2.461   1.361  -0.618  H31   6PZ  36  
6PZ  O2    O2   O  0  1  N  Y  N  -26.399  -8.137  -65.572  -2.546  -1.220   1.525  O2    6PZ  37  
6PZ  HO1B  H16  H  0  0  N  N  N  -24.719  -4.728  -65.042  -5.412  -1.217  -1.059  HO1B  6PZ  38  
6PZ  H17   H17  H  0  1  N  N  N  -34.518  -6.006  -65.846   4.448   0.286   2.032  H17   6PZ  39  
6PZ  H18   H18  H  0  1  N  N  N  -33.625  -7.517  -66.225   5.585  -0.548   0.945  H18   6PZ  40  
6PZ  H19   H19  H  0  1  N  N  N  -34.064  -7.136  -64.526   5.142   1.149   0.637  H19   6PZ  41  
6PZ  H111  H20  H  0  0  N  N  N  -31.540  -3.804  -69.341   0.443   2.822  -2.884  H111  6PZ  42  
6PZ  H113  H21  H  0  0  N  N  N  -30.479  -3.263  -67.997   0.174   4.428  -2.163  H113  6PZ  43  
6PZ  H112  H22  H  0  0  N  N  N  -29.754  -3.863  -69.527   1.822   3.764  -2.270  H112  6PZ  44  
6PZ  HO2   H15  H  0  1  N  Y  N  -25.466  -8.245  -65.426  -2.474  -2.185   1.517  HO2   6PZ  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6PZ  O4    C4    SING  N  N   1  
6PZ  C11   C10   SING  N  N   2  
6PZ  O10   C10   DOUB  N  N   3  
6PZ  C10   N5    SING  N  N   4  
6PZ  C4    C3    SING  N  N   5  
6PZ  C4    C5    SING  N  N   6  
6PZ  N5    C5    SING  N  N   7  
6PZ  C3    C2    SING  N  N   8  
6PZ  C5    C6    SING  N  N   9  
6PZ  C2    C1    SING  N  N  10  
6PZ  C2    O6    SING  N  N  11  
6PZ  O1A   C1    DOUB  N  N  12  
6PZ  C1    O1B   SING  N  N  13  
6PZ  O10A  C10A  DOUB  N  N  14  
6PZ  C11A  C10A  SING  N  N  15  
6PZ  C6    O6    SING  N  N  16  
6PZ  C6    C7    SING  N  N  17  
6PZ  C10A  N1    SING  N  N  18  
6PZ  N1    C7    SING  N  N  19  
6PZ  C7    C8    SING  N  N  20  
6PZ  C8    O8    SING  N  N  21  
6PZ  C8    C9    SING  N  N  22  
6PZ  N1    H1    SING  N  N  23  
6PZ  C7    H7    SING  N  N  24  
6PZ  C8    H8    SING  N  N  25  
6PZ  C9    H92   SING  N  N  26  
6PZ  C9    H91   SING  N  N  27  
6PZ  C9    H6A   SING  N  N  28  
6PZ  O8    HO8   SING  N  N  29  
6PZ  C6    H6    SING  N  N  30  
6PZ  C5    H5    SING  N  N  31  
6PZ  N5    HN5   SING  N  N  32  
6PZ  C4    H4    SING  N  N  33  
6PZ  O4    HO4   SING  N  N  34  
6PZ  C3    H32   SING  N  N  35  
6PZ  C3    H31   SING  N  N  36  
6PZ  C2    O2    SING  N  N  37  
6PZ  O1B   HO1B  SING  N  N  38  
6PZ  C11A  H17   SING  N  N  39  
6PZ  C11A  H18   SING  N  N  40  
6PZ  C11A  H19   SING  N  N  41  
6PZ  C11   H111  SING  N  N  42  
6PZ  C11   H113  SING  N  N  43  
6PZ  C11   H112  SING  N  N  44  
6PZ  O2    HO2   SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6PZ  InChI             InChI                 1.03   "InChI=1S/C13H22N2O8/c1-5(16)9(14-6(2)17)11-10(15-7(3)18)8(19)4-13(22,23-11)12(20)21/h5,8-11,16,19,22H,4H2,1-3H3,(H,14,17)(H,15,18)(H,20,21)/t5-,8-,9-,10-,11-,13-/m0/s1"  
6PZ  InChIKey          InChI                 1.03   ZJOSXOOPEBJBMC-LJRWBPDUSA-N  
6PZ  SMILES_CANONICAL  CACTVS                3.385  "C[C@H](O)[C@H](NC(C)=O)[C@@H]1O[C@@](O)(C[C@H](O)[C@@H]1NC(C)=O)C(O)=O"  
6PZ  SMILES            CACTVS                3.385  "C[CH](O)[CH](NC(C)=O)[CH]1O[C](O)(C[CH](O)[CH]1NC(C)=O)C(O)=O"  
6PZ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@@H]([C@@H]([C@H]1[C@H]([C@H](C[C@](O1)(C(=O)O)O)O)NC(=O)C)NC(=O)C)O"  
6PZ  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C(C1C(C(CC(O1)(C(=O)O)O)O)NC(=O)C)NC(=O)C)O"  
#
_pdbx_chem_comp_identifier.comp_id          6PZ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       
;(2~{S},4~{S},5~{S},6~{S})-5-acetamido-6-[(1~{S},2~{S})-1-acetamido-2-oxidanyl-propyl]-2,4-bis(oxidanyl)oxane-2-carboxyl
ic acid
;

#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
6PZ  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
6PZ  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
6PZ  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
6PZ  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6PZ  "Create component"          2016-05-19  RCSB  
6PZ  "Initial release"           2017-03-08  RCSB  
6PZ  "Modify name"               2017-11-15  PDBJ  
6PZ  "Modify synonyms"           2017-11-16  PDBJ  
6PZ  "Modify linking type"       2017-11-17  PDBJ  
6PZ  "Other modification"        2020-07-03  RCSB  
6PZ  "Modify name"               2020-07-17  RCSB  
6PZ  "Modify synonyms"           2020-07-17  RCSB  
6PZ  "Modify linking type"       2020-07-17  RCSB  
6PZ  "Modify atom id"            2020-07-17  RCSB  
6PZ  "Modify component atom id"  2020-07-17  RCSB  
6PZ  "Modify leaving atom flag"  2020-07-17  RCSB  
##
