data_8AZ
# 
_chem_comp.id                                    8AZ 
_chem_comp.name                                  "8-aza-nebularine-5'-monophosphate" 
_chem_comp.type                                  "RNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H14 N5 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-10-27 
_chem_comp.pdbx_modified_date                    2016-04-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        351.210 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8AZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5ED1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8AZ P     P1  P 0 1 N N N -23.020 -4.173  36.957 4.822  1.095  0.103  P     8AZ 1  
8AZ OP2   O1  O 0 1 N N N -24.525 -4.302  36.784 6.020  0.021  0.162  OP2   8AZ 2  
8AZ OP1   O2  O 0 1 N N N -22.031 -4.930  36.119 4.746  1.674  -1.257 OP1   8AZ 3  
8AZ "O5'" O3  O 0 1 N N N -22.738 -4.552  38.466 3.430  0.367  0.454  "O5'" 8AZ 4  
8AZ "C5'" C1  C 0 1 N N N -23.799 -4.607  39.412 2.853  -0.649 -0.369 "C5'" 8AZ 5  
8AZ "C4'" C2  C 0 1 N N R -23.647 -5.791  40.330 1.538  -1.124 0.252  "C4'" 8AZ 6  
8AZ "O4'" O4  O 0 1 N N N -23.748 -7.010  39.544 0.535  -0.089 0.159  "O4'" 8AZ 7  
8AZ "C1'" C3  C 0 1 N N R -22.597 -7.797  39.765 -0.730 -0.772 0.294  "C1'" 8AZ 8  
8AZ N9    N1  N 0 1 Y N N -22.314 -8.579  38.568 -1.813 0.046  -0.257 N9    8AZ 9  
8AZ N8    N2  N 0 1 Y N N -22.143 -8.053  37.325 -1.796 0.768  -1.465 N8    8AZ 10 
8AZ N7    N3  N 0 1 Y N N -21.909 -9.080  36.513 -2.936 1.362  -1.602 N7    8AZ 11 
8AZ C5    C4  C 0 1 Y N N -21.930 -10.248 37.217 -3.713 1.088  -0.574 C5    8AZ 12 
8AZ C6    C5  C 0 1 N N R -21.720 -11.680 36.814 -5.124 1.534  -0.264 C6    8AZ 13 
8AZ O6    O5  O 0 1 N N N -20.348 -12.012 36.585 -6.063 0.695  -0.939 O6    8AZ 14 
8AZ N1    N4  N 0 1 N N N -22.160 -12.473 37.963 -5.287 1.403  1.196  N1    8AZ 15 
8AZ C2    C6  C 0 1 N N N -22.154 -12.038 39.234 -4.700 0.365  1.866  C2    8AZ 16 
8AZ N3    N5  N 0 1 N N N -22.317 -10.780 39.606 -3.591 -0.190 1.451  N3    8AZ 17 
8AZ C4    C7  C 0 1 Y N N -22.202 -9.933  38.539 -3.034 0.256  0.289  C4    8AZ 18 
8AZ "C2'" C8  C 0 1 N N R -21.509 -6.825  40.187 -0.567 -2.071 -0.525 "C2'" 8AZ 19 
8AZ "O2'" O6  O 0 1 N N N -20.470 -7.490  40.869 -1.230 -3.158 0.123  "O2'" 8AZ 20 
8AZ "C3'" C9  C 0 1 N N S -22.309 -5.878  41.068 0.960  -2.308 -0.553 "C3'" 8AZ 21 
8AZ "O3'" O7  O 0 1 N N N -22.516 -6.531  42.316 1.286  -3.549 0.076  "O3'" 8AZ 22 
8AZ H1    H1  H 0 1 N N N -24.712 -4.917  36.085 6.128  -0.400 1.026  H1    8AZ 23 
8AZ H3    H3  H 0 1 N N N -23.794 -3.685  40.012 2.660  -0.245 -1.363 H3    8AZ 24 
8AZ H4    H4  H 0 1 N N N -24.755 -4.690  38.875 3.543  -1.489 -0.446 H4    8AZ 25 
8AZ H5    H5  H 0 1 N N N -24.455 -5.767  41.076 1.693  -1.412 1.292  H5    8AZ 26 
8AZ H6    H6  H 0 1 N N N -22.781 -8.486  40.603 -0.925 -1.005 1.341  H6    8AZ 27 
8AZ H7    H7  H 0 1 N N N -22.333 -11.913 35.931 -5.263 2.572  -0.565 H7    8AZ 28 
8AZ H8    H8  H 0 1 N N N -20.280 -12.926 36.335 -6.987 0.931  -0.780 H8    8AZ 29 
8AZ H9    H9  H 0 1 N N N -22.487 -13.402 37.790 -5.812 2.057  1.684  H9    8AZ 30 
8AZ H11   H11 H 0 1 N N N -22.005 -12.772 40.012 -5.168 -0.007 2.766  H11   8AZ 31 
8AZ H14   H14 H 0 1 N N N -21.130 -6.284  39.307 -0.953 -1.937 -1.535 H14   8AZ 32 
8AZ H15   H15 H 0 1 N N N -19.804 -6.862  41.122 -1.160 -4.000 -0.349 H15   8AZ 33 
8AZ H16   H16 H 0 1 N N N -21.827 -4.894  41.160 1.330  -2.290 -1.578 H16   8AZ 34 
8AZ H17   H17 H 0 1 N Y N -23.015 -5.964  42.892 0.947  -4.326 -0.388 H17   8AZ 35 
8AZ OP3   OP3 O 0 1 N Y N -22.613 -2.631  36.866 5.099  2.268  1.171  OP3   8AZ 36 
8AZ H2    H2  H 0 1 N Y N -21.848 -2.537  36.311 5.923  2.751  1.020  H2    8AZ 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8AZ OP1   P     DOUB N N 1  
8AZ N7    C5    SING Y N 2  
8AZ N7    N8    DOUB Y N 3  
8AZ O6    C6    SING N N 4  
8AZ OP2   P     SING N N 5  
8AZ C6    C5    SING N N 6  
8AZ C6    N1    SING N N 7  
8AZ P     "O5'" SING N N 8  
8AZ C5    C4    DOUB Y N 9  
8AZ N8    N9    SING Y N 10 
8AZ N1    C2    SING N N 11 
8AZ "O5'" "C5'" SING N N 12 
8AZ C4    N9    SING Y N 13 
8AZ C4    N3    SING N N 14 
8AZ N9    "C1'" SING N N 15 
8AZ C2    N3    DOUB N N 16 
8AZ "C5'" "C4'" SING N N 17 
8AZ "O4'" "C1'" SING N N 18 
8AZ "O4'" "C4'" SING N N 19 
8AZ "C1'" "C2'" SING N N 20 
8AZ "C2'" "O2'" SING N N 21 
8AZ "C2'" "C3'" SING N N 22 
8AZ "C4'" "C3'" SING N N 23 
8AZ "C3'" "O3'" SING N N 24 
8AZ OP2   H1    SING N N 25 
8AZ "C5'" H3    SING N N 26 
8AZ "C5'" H4    SING N N 27 
8AZ "C4'" H5    SING N N 28 
8AZ "C1'" H6    SING N N 29 
8AZ C6    H7    SING N N 30 
8AZ O6    H8    SING N N 31 
8AZ N1    H9    SING N N 32 
8AZ C2    H11   SING N N 33 
8AZ "C2'" H14   SING N N 34 
8AZ "O2'" H15   SING N N 35 
8AZ "C3'" H16   SING N N 36 
8AZ "O3'" H17   SING N N 37 
8AZ P     OP3   SING N N 38 
8AZ OP3   H2    SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8AZ InChI            InChI                1.03  "InChI=1S/C9H14N5O8P/c15-5-3(1-21-23(18,19)20)22-9(6(5)16)14-7-4(12-13-14)8(17)11-2-10-7/h2-3,5-6,8-9,15-17H,1H2,(H,10,11)(H2,18,19,20)/t3-,5-,6-,8-,9-/m1/s1" 
8AZ InChIKey         InChI                1.03  SBZIEWBNPJQPBV-TWZMMTIKSA-N                                                                                                                                    
8AZ SMILES_CANONICAL CACTVS               3.385 "O[C@H]1NC=Nc2n(nnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O"                                                                                            
8AZ SMILES           CACTVS               3.385 "O[CH]1NC=Nc2n(nnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O"                                                                                                   
8AZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C1=Nc2c(nnn2[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)[C@H](N1)O"                                                                                          
8AZ SMILES           "OpenEye OEToolkits" 2.0.4 "C1=Nc2c(nnn2C3C(C(C(O3)COP(=O)(O)O)O)O)C(N1)O"                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8AZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-[(7~{R})-7-oxidanyl-6,7-dihydro-[1,2,3]triazolo[4,5-d]pyrimidin-3-yl]oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8AZ "Create component" 2015-10-27 RCSB 
8AZ "Initial release"  2016-04-13 RCSB 
# 
