data_GMZ
#

_chem_comp.id                                   GMZ
_chem_comp.name                                 "1,7-di-O-phosphono-D-glycero-beta-D-manno-heptopyranose"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H16 O13 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;1,7-di-O-phosphono-D-glycero-beta-D-manno-heptose; 1,7-di-O-phosphono-D-glycero-D-manno-heptose;
1,7-di-O-phosphono-D-glycero-manno-heptose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-04-04
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       370.142
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GMZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4E84
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  GMZ  "1,7-di-O-phosphono-D-glycero-beta-D-manno-heptose"  PDB  ?  
2  GMZ  "1,7-di-O-phosphono-D-glycero-D-manno-heptose"       PDB  ?  
3  GMZ  "1,7-di-O-phosphono-D-glycero-manno-heptose"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GMZ  O5   O5   O  0  1  N  N  N  37.861  -43.011  48.290  -0.864   0.260   0.266  O5   GMZ   1  
GMZ  C1   C1   C  0  1  N  N  S  39.216  -42.776  48.624  -2.206   0.001  -0.151  C1   GMZ   2  
GMZ  O1   O1   O  0  1  N  N  N  39.304  -42.676  50.004  -2.681  -1.189   0.484  O1   GMZ   3  
GMZ  C2   C2   C  0  1  N  N  S  40.253  -43.763  48.123  -3.098   1.181   0.243  C2   GMZ   4  
GMZ  O2   O2   O  0  1  N  N  N  40.558  -44.689  49.110  -3.107   1.319   1.666  O2   GMZ   5  
GMZ  C3   C3   C  0  1  N  N  S  39.853  -44.470  46.894  -2.548   2.461  -0.392  C3   GMZ   6  
GMZ  O3   O3   O  0  1  N  N  N  40.689  -45.549  46.695  -3.332   3.579   0.030  O3   GMZ   7  
GMZ  C4   C4   C  0  1  N  N  S  38.455  -44.965  47.072  -1.096   2.656   0.054  C4   GMZ   8  
GMZ  O4   O4   O  0  1  N  N  N  38.094  -45.740  45.990  -0.549   3.809  -0.590  O4   GMZ   9  
GMZ  C5   C5   C  0  1  N  N  R  37.520  -43.812  47.226  -0.281   1.419  -0.333  C5   GMZ  10  
GMZ  C6   C6   C  0  1  N  N  R  36.105  -44.304  47.413   1.158   1.581   0.163  C6   GMZ  11  
GMZ  O6   O6   O  0  1  N  N  N  35.210  -43.261  47.321   1.740   2.741  -0.435  O6   GMZ  12  
GMZ  C7   C7   C  0  1  N  N  N  35.926  -44.953  48.765   1.972   0.344  -0.224  C7   GMZ  13  
GMZ  O7   O7   O  0  1  N  N  N  34.792  -45.764  48.745   3.282   0.442   0.338  O7   GMZ  14  
GMZ  P2   P2   P  0  1  N  N  N  33.405  -45.223  49.265   4.410  -0.688   0.134  P2   GMZ  15  
GMZ  OP4  OP4  O  0  1  N  N  N  32.349  -46.294  49.097   4.816  -0.766  -1.423  OP4  GMZ  16  
GMZ  OP5  OP5  O  0  1  N  N  N  33.499  -44.856  50.727   5.709  -0.315   1.009  OP5  GMZ  17  
GMZ  OP6  OP6  O  0  1  N  N  N  33.029  -44.007  48.461   3.881  -1.999   0.571  OP6  GMZ  18  
GMZ  P1   P1   P  0  1  N  N  N  39.001  -41.283  50.681  -2.509  -2.654  -0.160  P1   GMZ  19  
GMZ  OP1  OP1  O  0  1  N  N  N  40.290  -40.614  51.098  -3.362  -2.745  -1.523  OP1  GMZ  20  
GMZ  OP2  OP2  O  0  1  N  N  N  38.289  -40.391  49.686  -1.080  -2.899  -0.456  OP2  GMZ  21  
GMZ  OP3  OP3  O  0  1  N  N  N  38.121  -41.466  51.903  -3.039  -3.763   0.880  OP3  GMZ  22  
GMZ  H1   H1   H  0  1  N  N  N  39.493  -41.800  48.200  -2.232  -0.129  -1.233  H1   GMZ  23  
GMZ  H2   H2   H  0  1  N  N  N  41.160  -43.185  47.891  -4.114   1.004  -0.112  H2   GMZ  24  
GMZ  HO2  H3   H  0  1  N  Y  N  40.816  -44.234  49.903  -3.440   0.541   2.134  HO2  GMZ  25  
GMZ  H3   H4   H  0  1  N  N  N  39.890  -43.778  46.040  -2.588   2.376  -1.478  H3   GMZ  26  
GMZ  HO3  H5   H  0  1  N  Y  N  41.581  -45.242  46.581  -4.264   3.522  -0.219  HO3  GMZ  27  
GMZ  H4   H6   H  0  1  N  N  N  38.416  -45.566  47.992  -1.062   2.791   1.135  H4   GMZ  28  
GMZ  HO4  H7   H  0  1  N  Y  N  37.205  -46.053  46.107  -1.020   4.630  -0.393  HO4  GMZ  29  
GMZ  H5   H8   H  0  1  N  N  N  37.551  -43.224  46.297  -0.281   1.308  -1.417  H5   GMZ  30  
GMZ  H6   H9   H  0  1  N  N  N  35.894  -45.055  46.638   1.158   1.691   1.247  H6   GMZ  31  
GMZ  HO6  H10  H  0  1  N  Y  N  34.391  -43.508  47.735   1.773   2.711  -1.401  HO6  GMZ  32  
GMZ  H71  H11  H  0  1  N  N  N  36.810  -45.565  48.998   1.479  -0.550   0.158  H71  GMZ  33  
GMZ  H72  H12  H  0  1  N  N  N  35.806  -44.174  49.533   2.046   0.283  -1.309  H72  GMZ  34  
GMZ  H13  H13  H  0  1  N  N  N  31.666  -45.977  48.518   5.172   0.060  -1.778  H13  GMZ  35  
GMZ  H14  H14  H  0  1  N  N  N  33.301  -43.933  50.836   6.431  -0.953   0.934  H14  GMZ  36  
GMZ  H15  H15  H  0  1  N  N  N  40.375  -39.782  50.648  -4.310  -2.595  -1.404  H15  GMZ  37  
GMZ  H16  H16  H  0  1  N  N  N  37.311  -40.983  51.786  -2.966  -4.671   0.558  H16  GMZ  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GMZ  O4   C4   SING  N  N   1  
GMZ  O3   C3   SING  N  N   2  
GMZ  C3   C4   SING  N  N   3  
GMZ  C3   C2   SING  N  N   4  
GMZ  C4   C5   SING  N  N   5  
GMZ  C5   C6   SING  N  N   6  
GMZ  C5   O5   SING  N  N   7  
GMZ  O6   C6   SING  N  N   8  
GMZ  C6   C7   SING  N  N   9  
GMZ  C2   C1   SING  N  N  10  
GMZ  C2   O2   SING  N  N  11  
GMZ  O5   C1   SING  N  N  12  
GMZ  OP6  P2   DOUB  N  N  13  
GMZ  C1   O1   SING  N  N  14  
GMZ  O7   C7   SING  N  N  15  
GMZ  O7   P2   SING  N  N  16  
GMZ  OP4  P2   SING  N  N  17  
GMZ  P2   OP5  SING  N  N  18  
GMZ  OP2  P1   DOUB  N  N  19  
GMZ  O1   P1   SING  N  N  20  
GMZ  P1   OP1  SING  N  N  21  
GMZ  P1   OP3  SING  N  N  22  
GMZ  C1   H1   SING  N  N  23  
GMZ  C2   H2   SING  N  N  24  
GMZ  O2   HO2  SING  N  N  25  
GMZ  C3   H3   SING  N  N  26  
GMZ  O3   HO3  SING  N  N  27  
GMZ  C4   H4   SING  N  N  28  
GMZ  O4   HO4  SING  N  N  29  
GMZ  C5   H5   SING  N  N  30  
GMZ  C6   H6   SING  N  N  31  
GMZ  O6   HO6  SING  N  N  32  
GMZ  C7   H71  SING  N  N  33  
GMZ  C7   H72  SING  N  N  34  
GMZ  OP4  H13  SING  N  N  35  
GMZ  OP5  H14  SING  N  N  36  
GMZ  OP1  H15  SING  N  N  37  
GMZ  OP3  H16  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GMZ  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC(O)C1OC(OP(=O)(O)O)C(O)C(O)C1O"  
GMZ  InChI             InChI                 1.03   "InChI=1S/C7H16O13P2/c8-2(1-18-21(12,13)14)6-4(10)3(9)5(11)7(19-6)20-22(15,16)17/h2-11H,1H2,(H2,12,13,14)(H2,15,16,17)/t2-,3+,4+,5+,6-,7+/m1/s1"  
GMZ  InChIKey          InChI                 1.03   LMTGTTLGDUACSJ-QTNLNCNHSA-N  
GMZ  SMILES_CANONICAL  CACTVS                3.370  "O[C@H](CO[P](O)(O)=O)[C@H]1O[C@@H](O[P](O)(O)=O)[C@@H](O)[C@@H](O)[C@@H]1O"  
GMZ  SMILES            CACTVS                3.370  "O[CH](CO[P](O)(O)=O)[CH]1O[CH](O[P](O)(O)=O)[CH](O)[CH](O)[CH]1O"  
GMZ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@H]([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)OP(=O)(O)O)O)O)O)O)OP(=O)(O)O"  
GMZ  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C(C1C(C(C(C(O1)OP(=O)(O)O)O)O)O)O)OP(=O)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GMZ  "SYSTEMATIC NAME"  ACDLabs               12.01  "1,7-di-O-phosphono-D-glycero-beta-D-manno-heptopyranose"  
GMZ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[(2R)-2-oxidanyl-2-[(2R,3S,4S,5S,6S)-3,4,5-tris(oxidanyl)-6-phosphonooxy-oxan-2-yl]ethyl] dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GMZ  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GMZ  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GMZ  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
GMZ  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GMZ  "Create component"          2012-04-04  RCSB  
GMZ  "Initial release"           2012-12-21  RCSB  
GMZ  "Other modification"        2020-07-03  RCSB  
GMZ  "Modify synonyms"           2020-07-17  RCSB  
GMZ  "Modify internal type"      2020-07-17  RCSB  
GMZ  "Modify linking type"       2020-07-17  RCSB  
GMZ  "Modify atom id"            2020-07-17  RCSB  
GMZ  "Modify component atom id"  2020-07-17  RCSB  
GMZ  "Modify leaving atom flag"  2020-07-17  RCSB  
##
