data_JIZ
# 
_chem_comp.id                                    JIZ 
_chem_comp.name                                  "(4~{S},11~{S},18~{S})-4,11-dimethyl-18-(sulfanylmethyl)-6,13,20-trithia-3,10,17,22,23,24-hexazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H18 N6 O3 S4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        494.634 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JIZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZK5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JIZ C10 C1  C 0 1 N N N N N N 117.622 123.383 138.303 -3.710 1.145  -0.030 C10 JIZ 1  
JIZ C13 C2  C 0 1 Y N N N N N 120.432 118.577 138.133 1.249  3.245  -0.372 C13 JIZ 2  
JIZ C15 C3  C 0 1 N N N N N N 120.701 117.599 139.275 2.471  2.420  -0.411 C15 JIZ 3  
JIZ C17 C4  C 0 1 N N N N N N 120.469 123.047 136.363 -3.082 3.750  0.934  C17 JIZ 4  
JIZ C01 C5  C 0 1 N N S N N N 120.964 117.257 141.792 3.566  0.262  -0.481 C01 JIZ 5  
JIZ C02 C6  C 0 1 Y N N N N N 120.251 117.921 142.967 3.178  -1.196 -0.484 C02 JIZ 6  
JIZ C03 C7  C 0 1 Y N N N N N 118.898 119.452 144.264 1.815  -2.950 -0.451 C03 JIZ 7  
JIZ C04 C8  C 0 1 Y N N N N N 119.414 118.420 145.251 2.981  -3.628 -0.507 C04 JIZ 8  
JIZ C05 C9  C 0 1 N N N N N N 117.998 120.657 144.535 0.490  -3.596 -0.399 C05 JIZ 9  
JIZ C06 C10 C 0 1 N N S N N N 117.085 122.861 143.601 -1.925 -3.450 -0.278 C06 JIZ 10 
JIZ C07 C11 C 0 1 Y N N N N N 116.960 123.420 142.187 -2.977 -2.384 -0.097 C07 JIZ 11 
JIZ C08 C12 C 0 1 Y N N N N N 117.176 123.713 139.727 -3.804 -0.327 0.019  C08 JIZ 12 
JIZ C09 C13 C 0 1 Y N N N N N 116.373 124.847 140.170 -4.952 -0.997 0.255  C09 JIZ 13 
JIZ C11 C14 C 0 1 N N S N N N 119.321 122.159 136.833 -2.407 3.168  -0.309 C11 JIZ 14 
JIZ C12 C15 C 0 1 Y N N N N N 119.782 120.718 137.041 -0.949 3.556  -0.327 C12 JIZ 15 
JIZ C14 C16 C 0 1 Y N N N N N 120.542 118.323 136.699 1.258  4.595  -0.342 C14 JIZ 16 
JIZ C16 C17 C 0 1 N N N N N N 117.767 123.881 144.509 -1.944 -4.403 0.919  C16 JIZ 17 
JIZ C18 C18 C 0 1 N N N N N N 122.450 117.076 142.102 4.417  0.567  0.753  C18 JIZ 18 
JIZ N01 N1  N 0 1 N N N N N N 120.739 118.108 140.636 2.325  1.064  -0.444 N01 JIZ 19 
JIZ N02 N2  N 0 1 Y N N N N N 119.495 119.049 142.792 1.964  -1.621 -0.439 N02 JIZ 20 
JIZ N03 N3  N 0 1 N N N N N N 117.901 121.666 143.494 -0.608 -2.785 -0.365 N03 JIZ 21 
JIZ N04 N4  N 0 1 Y N N N N N 117.540 122.816 141.022 -2.746 -1.120 -0.169 N04 JIZ 22 
JIZ N05 N5  N 0 1 N N N N N N 118.810 122.566 138.130 -2.484 1.692  -0.276 N05 JIZ 23 
JIZ N06 N6  N 0 1 Y N N N N N 119.937 120.103 138.331 0.023  2.714  -0.364 N06 JIZ 24 
JIZ O01 O1  O 0 1 N N N N N N 117.401 120.762 145.553 0.379  -4.807 -0.389 O01 JIZ 25 
JIZ O02 O2  O 0 1 N N N N N N 117.015 123.778 137.367 -4.690 1.845  0.139  O02 JIZ 26 
JIZ O03 O3  O 0 1 N N N N N N 120.866 116.446 139.055 3.574  2.932  -0.414 O03 JIZ 27 
JIZ S01 S1  S 0 1 Y N N N N N 120.299 117.409 144.425 4.271  -2.505 -0.549 S01 JIZ 28 
JIZ S02 S2  S 0 1 Y N N N N N 116.195 124.731 141.720 -4.627 -2.676 0.227  S02 JIZ 29 
JIZ S03 S3  S 0 1 Y N N N N N 120.149 119.633 135.939 -0.358 5.157  -0.302 S03 JIZ 30 
JIZ S04 S4  S 0 1 N N N N N N 123.400 118.577 141.724 3.482  0.153  2.251  S04 JIZ 31 
JIZ H1  H1  H 0 1 N N N N N N 120.104 124.075 136.223 -2.999 4.837  0.918  H1  JIZ 32 
JIZ H2  H2  H 0 1 N N N N N N 121.269 123.041 137.118 -4.135 3.467  0.942  H2  JIZ 33 
JIZ H3  H3  H 0 1 N N N N N N 120.862 122.664 135.409 -2.595 3.361  1.828  H3  JIZ 34 
JIZ H4  H4  H 0 1 N N N N N N 120.516 116.268 141.619 4.129  0.496  -1.385 H4  JIZ 35 
JIZ H5  H5  H 0 1 N N N N N N 119.214 118.385 146.312 3.082  -4.703 -0.523 H5  JIZ 36 
JIZ H6  H6  H 0 1 N N N N N N 116.087 122.620 143.996 -2.118 -4.007 -1.194 H6  JIZ 37 
JIZ H7  H7  H 0 1 N N N N N N 115.973 125.628 139.540 -5.918 -0.547 0.433  H7  JIZ 38 
JIZ H8  H8  H 0 1 N N N N N N 118.517 122.178 136.083 -2.900 3.543  -1.206 H8  JIZ 39 
JIZ H9  H9  H 0 1 N N N N N N 120.843 117.392 136.242 2.140  5.219  -0.342 H9  JIZ 40 
JIZ H11 H11 H 0 1 N N N N N N 117.852 123.469 145.525 -2.921 -4.882 0.987  H11 JIZ 41 
JIZ H12 H12 H 0 1 N N N N N N 118.771 124.105 144.119 -1.175 -5.165 0.790  H12 JIZ 42 
JIZ H13 H13 H 0 1 N N N N N N 122.842 116.244 141.498 5.332  -0.025 0.719  H13 JIZ 43 
JIZ H14 H14 H 0 1 N N N N N N 122.566 116.840 143.170 4.672  1.627  0.765  H14 JIZ 44 
JIZ H15 H15 H 0 1 N N N N N N 120.604 119.088 140.783 1.449  0.647  -0.442 H15 JIZ 45 
JIZ H16 H16 H 0 1 N N N N N N 118.427 121.529 142.655 -0.527 -1.819 -0.396 H16 JIZ 46 
JIZ H17 H17 H 0 1 N N N N N N 119.302 122.268 138.948 -1.701 1.139  -0.422 H17 JIZ 47 
JIZ H18 H18 H 0 1 N N N N N N 124.607 118.222 142.050 4.339  0.467  3.239  H18 JIZ 48 
JIZ H10 H10 H 0 1 N N N N N N 117.170 124.804 144.537 -1.750 -3.842 1.834  H10 JIZ 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JIZ S03 C14 SING Y N 1  
JIZ S03 C12 SING Y N 2  
JIZ C17 C11 SING N N 3  
JIZ C14 C13 DOUB Y N 4  
JIZ C11 C12 SING N N 5  
JIZ C11 N05 SING N N 6  
JIZ C12 N06 DOUB Y N 7  
JIZ O02 C10 DOUB N N 8  
JIZ N05 C10 SING N N 9  
JIZ C13 N06 SING Y N 10 
JIZ C13 C15 SING N N 11 
JIZ C10 C08 SING N N 12 
JIZ O03 C15 DOUB N N 13 
JIZ C15 N01 SING N N 14 
JIZ C08 C09 DOUB Y N 15 
JIZ C08 N04 SING Y N 16 
JIZ C09 S02 SING Y N 17 
JIZ N01 C01 SING N N 18 
JIZ N04 C07 DOUB Y N 19 
JIZ S02 C07 SING Y N 20 
JIZ S04 C18 SING N N 21 
JIZ C01 C18 SING N N 22 
JIZ C01 C02 SING N N 23 
JIZ C07 C06 SING N N 24 
JIZ N02 C02 DOUB Y N 25 
JIZ N02 C03 SING Y N 26 
JIZ C02 S01 SING Y N 27 
JIZ N03 C06 SING N N 28 
JIZ N03 C05 SING N N 29 
JIZ C06 C16 SING N N 30 
JIZ C03 C05 SING N N 31 
JIZ C03 C04 DOUB Y N 32 
JIZ S01 C04 SING Y N 33 
JIZ C05 O01 DOUB N N 34 
JIZ C17 H1  SING N N 35 
JIZ C17 H2  SING N N 36 
JIZ C17 H3  SING N N 37 
JIZ C01 H4  SING N N 38 
JIZ C04 H5  SING N N 39 
JIZ C06 H6  SING N N 40 
JIZ C09 H7  SING N N 41 
JIZ C11 H8  SING N N 42 
JIZ C14 H9  SING N N 43 
JIZ C16 H11 SING N N 44 
JIZ C16 H12 SING N N 45 
JIZ C18 H13 SING N N 46 
JIZ C18 H14 SING N N 47 
JIZ N01 H15 SING N N 48 
JIZ N03 H16 SING N N 49 
JIZ N05 H17 SING N N 50 
JIZ S04 H18 SING N N 51 
JIZ C16 H10 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JIZ InChI            InChI                1.06  "InChI=1S/C18H18N6O3S4/c1-7-16-22-10(4-29-16)13(25)19-8(2)17-23-12(5-30-17)15(27)21-9(3-28)18-24-11(6-31-18)14(26)20-7/h4-9,28H,3H2,1-2H3,(H,19,25)(H,20,26)(H,21,27)/t7-,8-,9-/m0/s1" 
JIZ InChIKey         InChI                1.06  ZWMLZIGVMMBHAX-CIUDSAMLSA-N                                                                                                                                                            
JIZ SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1NC(=O)c2csc(n2)[C@H](C)NC(=O)c3csc(n3)[C@H](CS)NC(=O)c4csc1n4"                                                                                                                
JIZ SMILES           CACTVS               3.385 "C[CH]1NC(=O)c2csc(n2)[CH](C)NC(=O)c3csc(n3)[CH](CS)NC(=O)c4csc1n4"                                                                                                                    
JIZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1c2nc(cs2)C(=O)N[C@H](c3nc(cs3)C(=O)N[C@H](c4nc(cs4)C(=O)N1)CS)C"                                                                                                               
JIZ SMILES           "OpenEye OEToolkits" 2.0.7 "CC1c2nc(cs2)C(=O)NC(c3nc(cs3)C(=O)NC(c4nc(cs4)C(=O)N1)CS)C"                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           JIZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(4~{S},11~{S},18~{S})-4,11-dimethyl-18-(sulfanylmethyl)-6,13,20-trithia-3,10,17,22,23,24-hexazatetracyclo[17.2.1.1^{5,8}.1^{12,15}]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JIZ "Create component"  2022-04-28 PDBE 
JIZ "Modify descriptor" 2022-08-22 RCSB 
JIZ "Initial release"   2023-04-26 RCSB 
JIZ "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            JIZ 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               S04 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
