data_Z1Z
# 
_chem_comp.id                                    Z1Z 
_chem_comp.name                                  "(3S,5R)-N-(4-chloro-3-fluorophenyl)-1-(4-glycylpiperazine-1-carbonyl)-5-(hydroxymethyl)piperidine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H27 Cl F N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-06 
_chem_comp.pdbx_modified_date                    2023-06-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        455.911 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Z1Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GD3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Z1Z C10 C1  C  0 1 N N N -2.067 17.519 -12.430 0.256  0.500  0.457  C10 Z1Z 1  
Z1Z C11 C2  C  0 1 N N S -1.901 17.844 -13.954 0.875  -0.546 -0.476 C11 Z1Z 2  
Z1Z C12 C3  C  0 1 N N N -3.044 17.533 -14.972 2.372  -0.553 -0.301 C12 Z1Z 3  
Z1Z C15 C4  C  0 1 Y N N -3.330 17.273 -17.527 4.461  0.585  -0.297 C15 Z1Z 4  
Z1Z C16 C5  C  0 1 Y N N -4.720 17.258 -17.508 5.224  -0.556 -0.508 C16 Z1Z 5  
Z1Z C17 C6  C  0 1 Y N N -5.418 17.044 -18.683 6.584  -0.532 -0.259 C17 Z1Z 6  
Z1Z C19 C7  C  0 1 Y N N -4.737 16.862 -19.879 7.185  0.630  0.200  C19 Z1Z 7  
Z1Z C21 C8  C  0 1 Y N N -3.350 16.898 -19.900 6.425  1.766  0.411  C21 Z1Z 8  
Z1Z C22 C9  C  0 1 Y N N -2.644 17.101 -18.719 5.067  1.748  0.158  C22 Z1Z 9  
Z1Z C23 C10 C  0 1 N N N -1.622 19.277 -14.182 0.313  -1.927 -0.131 C23 Z1Z 10 
Z1Z C24 C11 C  0 1 N N R -0.349 19.664 -13.509 -1.203 -1.929 -0.340 C24 Z1Z 11 
Z1Z C25 C12 C  0 1 N N N -0.212 21.196 -13.384 -1.760 -3.320 -0.026 C25 Z1Z 12 
Z1Z C27 C13 C  0 1 N N N -0.318 19.153 -12.068 -1.845 -0.899 0.595  C27 Z1Z 13 
Z1Z C29 C14 C  0 1 N N N -0.925 14.538 -11.872 -4.157 2.234  -0.668 C29 Z1Z 14 
Z1Z C30 C15 C  0 1 N N N -1.259 14.032 -10.474 -5.158 1.288  -1.342 C30 Z1Z 15 
Z1Z C02 C16 C  0 1 N N N 0.297  10.912 -8.540  -7.743 -0.466 0.886  C02 Z1Z 16 
Z1Z C03 C17 C  0 1 N N N -0.642 12.036 -8.998  -7.120 0.400  -0.178 C03 Z1Z 17 
Z1Z C05 C18 C  0 1 N N N 0.929  13.026 -10.794 -4.913 -0.340 0.579  C05 Z1Z 18 
Z1Z C06 C19 C  0 1 N N N 1.379  14.385 -11.328 -3.912 0.607  1.254  C06 Z1Z 19 
Z1Z C08 C20 C  0 1 N N N 0.446  16.732 -11.729 -1.950 1.494  0.089  C08 Z1Z 20 
Z1Z F18 F1  F  0 1 N N N -6.782 17.008 -18.653 7.328  -1.641 -0.464 F18 Z1Z 21 
Z1Z N01 N1  N  0 1 N N N 1.725  11.176 -8.629  -9.206 -0.345 0.822  N01 Z1Z 22 
Z1Z N04 N2  N  0 1 N N N -0.323 12.996 -10.051 -5.779 0.448  -0.309 N04 Z1Z 23 
Z1Z N07 N3  N  0 1 N N N 0.288  15.282 -11.668 -3.291 1.447  0.220  N07 Z1Z 24 
Z1Z N09 N4  N  0 1 N N N -0.625 17.699 -12.022 -1.207 0.405  0.370  N09 Z1Z 25 
Z1Z N14 N5  N  0 1 N N N -2.557 17.500 -16.333 3.084  0.564  -0.548 N14 Z1Z 26 
Z1Z O13 O1  O  0 1 N N N -4.186 17.371 -14.693 2.935  -1.565 0.060  O13 Z1Z 27 
Z1Z O26 O2  O  0 1 N N N 0.806  21.419 -12.447 -3.155 -3.355 -0.333 O26 Z1Z 28 
Z1Z O28 O3  O  0 1 N N N 1.525  17.163 -11.504 -1.411 2.518  -0.283 O28 Z1Z 29 
Z1Z O31 O4  O  0 1 N N N -1.702 12.120 -8.471  -7.825 1.054  -0.917 O31 Z1Z 30 
Z1Z CL1 CL1 CL 0 0 N N N -5.644 16.587 -21.392 8.892  0.658  0.512  CL1 Z1Z 31 
Z1Z H1  H1  H  0 1 N N N -2.736 18.229 -11.922 0.575  0.309  1.482  H1  Z1Z 32 
Z1Z H2  H2  H  0 1 N N N -2.424 16.493 -12.259 0.577  1.497  0.155  H2  Z1Z 33 
Z1Z H3  H3  H  0 1 N N N -1.020 17.281 -14.296 0.630  -0.301 -1.510 H3  Z1Z 34 
Z1Z H4  H4  H  0 1 N N N -5.252 17.413 -16.581 4.755  -1.461 -0.866 H4  Z1Z 35 
Z1Z H5  H5  H  0 1 N N N -2.820 16.769 -20.832 6.895  2.670  0.770  H5  Z1Z 36 
Z1Z H6  H6  H  0 1 N N N -1.564 17.125 -18.731 4.475  2.637  0.323  H6  Z1Z 37 
Z1Z H7  H7  H  0 1 N N N -1.534 19.463 -15.263 0.770  -2.677 -0.777 H7  Z1Z 38 
Z1Z H8  H8  H  0 1 N N N -2.447 19.878 -13.773 0.536  -2.161 0.910  H8  Z1Z 39 
Z1Z H9  H9  H  0 1 N N N 0.512  19.262 -14.064 -1.428 -1.672 -1.375 H9  Z1Z 40 
Z1Z H10 H10 H  0 1 N N N 0.060  21.636 -14.355 -1.237 -4.064 -0.627 H10 Z1Z 41 
Z1Z H11 H11 H  0 1 N N N -1.157 21.637 -13.033 -1.614 -3.539 1.031  H11 Z1Z 42 
Z1Z H12 H12 H  0 1 N N N 0.683  19.325 -11.645 -2.911 -0.826 0.381  H12 Z1Z 43 
Z1Z H13 H13 H  0 1 N N N -1.066 19.699 -11.474 -1.698 -1.204 1.631  H13 Z1Z 44 
Z1Z H14 H14 H  0 1 N N N -1.725 15.186 -12.259 -3.551 2.728  -1.427 H14 Z1Z 45 
Z1Z H15 H15 H  0 1 N N N -0.763 13.701 -12.567 -4.696 2.981  -0.084 H15 Z1Z 46 
Z1Z H16 H16 H  0 1 N N N -1.208 14.873 -9.766  -5.926 1.870  -1.851 H16 Z1Z 47 
Z1Z H17 H17 H  0 1 N N N -2.277 13.616 -10.477 -4.637 0.657  -2.062 H17 Z1Z 48 
Z1Z H18 H18 H  0 1 N N N 0.064  10.691 -7.488  -7.457 -1.505 0.722  H18 Z1Z 49 
Z1Z H19 H19 H  0 1 N N N 0.083  10.027 -9.157  -7.394 -0.144 1.867  H19 Z1Z 50 
Z1Z H20 H20 H  0 1 N N N 0.822  12.349 -11.654 -4.374 -1.087 -0.004 H20 Z1Z 51 
Z1Z H21 H21 H  0 1 N N N 1.720  12.651 -10.128 -5.520 -0.836 1.337  H21 Z1Z 52 
Z1Z H22 H22 H  0 1 N N N 1.983  14.218 -12.232 -4.434 1.237  1.973  H22 Z1Z 53 
Z1Z H23 H23 H  0 1 N N N 1.998  14.870 -10.559 -3.146 0.024  1.765  H23 Z1Z 54 
Z1Z H24 H24 H  0 1 N N N 2.233  10.378 -8.305  -9.647 -0.917 1.527  H24 Z1Z 55 
Z1Z H25 H25 H  0 1 N N N 1.970  11.364 -9.580  -9.492 0.619  0.907  H25 Z1Z 56 
Z1Z H27 H27 H  0 1 N N N -1.577 17.651 -16.459 2.643  1.353  -0.899 H27 Z1Z 57 
Z1Z H28 H28 H  0 1 N N N 0.932  22.354 -12.332 -3.575 -4.208 -0.158 H28 Z1Z 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Z1Z CL1 C19 SING N N 1  
Z1Z C21 C19 DOUB Y N 2  
Z1Z C21 C22 SING Y N 3  
Z1Z C19 C17 SING Y N 4  
Z1Z C22 C15 DOUB Y N 5  
Z1Z C17 F18 SING N N 6  
Z1Z C17 C16 DOUB Y N 7  
Z1Z C15 C16 SING Y N 8  
Z1Z C15 N14 SING N N 9  
Z1Z N14 C12 SING N N 10 
Z1Z C12 O13 DOUB N N 11 
Z1Z C12 C11 SING N N 12 
Z1Z C23 C11 SING N N 13 
Z1Z C23 C24 SING N N 14 
Z1Z C11 C10 SING N N 15 
Z1Z C24 C25 SING N N 16 
Z1Z C24 C27 SING N N 17 
Z1Z C25 O26 SING N N 18 
Z1Z C10 N09 SING N N 19 
Z1Z C27 N09 SING N N 20 
Z1Z N09 C08 SING N N 21 
Z1Z C29 N07 SING N N 22 
Z1Z C29 C30 SING N N 23 
Z1Z C08 N07 SING N N 24 
Z1Z C08 O28 DOUB N N 25 
Z1Z N07 C06 SING N N 26 
Z1Z C06 C05 SING N N 27 
Z1Z C05 N04 SING N N 28 
Z1Z C30 N04 SING N N 29 
Z1Z N04 C03 SING N N 30 
Z1Z C03 C02 SING N N 31 
Z1Z C03 O31 DOUB N N 32 
Z1Z N01 C02 SING N N 33 
Z1Z C10 H1  SING N N 34 
Z1Z C10 H2  SING N N 35 
Z1Z C11 H3  SING N N 36 
Z1Z C16 H4  SING N N 37 
Z1Z C21 H5  SING N N 38 
Z1Z C22 H6  SING N N 39 
Z1Z C23 H7  SING N N 40 
Z1Z C23 H8  SING N N 41 
Z1Z C24 H9  SING N N 42 
Z1Z C25 H10 SING N N 43 
Z1Z C25 H11 SING N N 44 
Z1Z C27 H12 SING N N 45 
Z1Z C27 H13 SING N N 46 
Z1Z C29 H14 SING N N 47 
Z1Z C29 H15 SING N N 48 
Z1Z C30 H16 SING N N 49 
Z1Z C30 H17 SING N N 50 
Z1Z C02 H18 SING N N 51 
Z1Z C02 H19 SING N N 52 
Z1Z C05 H20 SING N N 53 
Z1Z C05 H21 SING N N 54 
Z1Z C06 H22 SING N N 55 
Z1Z C06 H23 SING N N 56 
Z1Z N01 H24 SING N N 57 
Z1Z N01 H25 SING N N 58 
Z1Z N14 H27 SING N N 59 
Z1Z O26 H28 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Z1Z SMILES           ACDLabs              12.01 "O=C(N1CC(CC(CO)C1)C(=O)Nc1ccc(Cl)c(F)c1)N1CCN(CC1)C(=O)CN"                                                                                                                    
Z1Z InChI            InChI                1.06  "InChI=1S/C20H27ClFN5O4/c21-16-2-1-15(8-17(16)22)24-19(30)14-7-13(12-28)10-27(11-14)20(31)26-5-3-25(4-6-26)18(29)9-23/h1-2,8,13-14,28H,3-7,9-12,23H2,(H,24,30)/t13-,14+/m1/s1" 
Z1Z InChIKey         InChI                1.06  IUMJQOWKMYPJNQ-KGLIPLIRSA-N                                                                                                                                                    
Z1Z SMILES_CANONICAL CACTVS               3.385 "NCC(=O)N1CCN(CC1)C(=O)N2C[C@H](CO)C[C@@H](C2)C(=O)Nc3ccc(Cl)c(F)c3"                                                                                                           
Z1Z SMILES           CACTVS               3.385 "NCC(=O)N1CCN(CC1)C(=O)N2C[CH](CO)C[CH](C2)C(=O)Nc3ccc(Cl)c(F)c3"                                                                                                              
Z1Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1NC(=O)[C@H]2C[C@H](CN(C2)C(=O)N3CCN(CC3)C(=O)CN)CO)F)Cl"                                                                                                            
Z1Z SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1NC(=O)C2CC(CN(C2)C(=O)N3CCN(CC3)C(=O)CN)CO)F)Cl"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Z1Z "SYSTEMATIC NAME" ACDLabs              12.01 "(3S,5R)-N-(4-chloro-3-fluorophenyl)-1-(4-glycylpiperazine-1-carbonyl)-5-(hydroxymethyl)piperidine-3-carboxamide"                              
Z1Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},5~{R})-1-[4-(2-azanylethanoyl)piperazin-1-yl]carbonyl-~{N}-(4-chloranyl-3-fluoranyl-phenyl)-5-(hydroxymethyl)piperidine-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Z1Z "Create component" 2023-03-06 RCSB 
Z1Z "Initial release"  2023-06-07 RCSB 
# 
